BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0278.p (343 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311646|ref|YP_003775738.1| taurine ABC transporter peripla... 120 2e-28 gi|300310977|ref|YP_003775069.1| alkanesulfonates ABC transporte... 68 1e-12 gi|300313870|ref|YP_003777962.1| nitrate/sulfonate/bicarbonate A... 58 1e-09 gi|300310819|ref|YP_003774911.1| nitrate/sulfonate/bicarbonate A... 58 1e-09 gi|300310915|ref|YP_003775007.1| alkanesulfonates ABC transporte... 56 4e-09 >gi|300311646|ref|YP_003775738.1| taurine ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 335 Score = 120 bits (300), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 87/287 (30%), Positives = 144/287 (50%), Gaps = 24/287 (8%) Query: 55 FDKSFGAPVKWIPFATGADVLSLFAAKEIDIARFGSSPAVAGIARKLPIEIISVPEVIAT 114 F+K+ G + + F +GADV++ A ++ + GSSP A +R L ++ + + T Sbjct: 49 FEKATGKKIDFRKFNSGADVIAAIAGGDVQVGYVGSSPLAAAASRGLDVKAFYLASISGT 108 Query: 115 SERLIGRKSKNINSIKDIEGKTVAYPPNSTAQYALELAIKVNRLDKSKIRLVPLKPADQV 174 E L+ R INS+ D++GK +A P ST Y L IK + +++ + D V Sbjct: 109 DEALVVRNGAGINSVADLKGKKLAAAPVSTDHYQLLALIKSQGWTEKDVKVFAIPQPDIV 168 Query: 175 AAWKRGDIDAAYVWGPFTQQFEADGGHEIFVT-KQLQKDGYLVYNNFVVRKEFAEKYPQL 233 AA+ RGDID +VW P + + +G ++ VT K + G ++ ++ FA+++P+ Sbjct: 169 AAYNRGDIDGGFVWDPALTELKKNG--KVLVTSKDVADKGAPTFSAWIATGSFAKEHPE- 225 Query: 234 VVKFLRTYQEKVDQ-----------YKKDPDGSAQLIAKHLDIPFETARSVLTGLEYPSS 282 FL+T+ +D+ + KD + +A+L+AK L + L L Sbjct: 226 ---FLKTFSAVIDKASLSFQNDKAAWNKDSE-NARLLAKLLGGTPADQAAGLQNLNLVPV 281 Query: 283 TEQLTPAYLGNGAATPTSGIAKAAKDTANFLVEIGDLRKSDVPESFA 329 Q +P +LG G SGIA+ K+TA FL E + SDV S+A Sbjct: 282 AAQASPTWLGGG---ENSGIARILKETAVFLKE--QKKISDVLPSYA 323 >gi|300310977|ref|YP_003775069.1| alkanesulfonates ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 327 Score = 68.2 bits (165), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 62/229 (27%), Positives = 101/229 (44%), Gaps = 13/229 (5%) Query: 11 AAAAALIVTTLGANLAHAENVPQEVRFAWAGGPRVWILGKIDKSFDKSF---GAPVKWIP 67 A A + LGA+ A+ + +R + +L K + +K G VKW Sbjct: 22 AIALGALTIALGASPVQAQET-KLLRIGYQKAANTLVLLKAHGTLEKRLQPLGVEVKWAE 80 Query: 68 FATGADVLSLFAAKEIDIARFGSSPAVAGIARKLPIEIISVPEVIAT--SERLIGRKSKN 125 FA G +L +D G +P V A+ + + I T +E L+ +K+ Sbjct: 81 FAAGPQLLEALNVGSVDFGYVGEAPPV--FAQAAGADFVYTAYEIPTPDAEGLLVQKNSP 138 Query: 126 INSIKDIEGKTVAYPPNSTAQYALELAIKVNRLDKSKIRLVPLKPADQVAAWKRGDIDAA 185 I S+ +++GK +A+ S + + +K L S I+ V L PAD AA++RG +DA Sbjct: 139 IKSVAELKGKKIAFNKGSDVHWLVVALLKKAGLQYSDIQPVYLAPADARAAFERGAVDAW 198 Query: 186 YVWGPFTQQFEADGGHEIFVTKQLQKDGYLVYNNFVVR-KEFAEKYPQL 233 +W PF E G T G + ++ F + + FA K PQ+ Sbjct: 199 AIWDPFQAAAEKQVGARRLATGV----GAVNHHQFFLSARPFAAKNPQV 243 >gi|300313870|ref|YP_003777962.1| nitrate/sulfonate/bicarbonate ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 323 Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 52/221 (23%), Positives = 94/221 (42%), Gaps = 11/221 (4%) Query: 49 GKIDKSFDKSFGAPVKWIPFATGADVLSLFAAKEIDIARFGSSPAVAGIARKLPIEIISV 108 GK++++ G VKW FA G + A ID+ +P+V A + + Sbjct: 54 GKLEQALQPQ-GWSVKWFEFAAGPQLTEALNANAIDLGHAADTPSVFANASGVNAVYLGA 112 Query: 109 PEVIATSERLIGRKSKNINSIKDIEGKTVAYPPNSTAQYALELAIKVNRLDKSKIRLVPL 168 + + + I S+ D++GK VA Q+ L A++ L I V + Sbjct: 113 EQPYPKGIGIFVAQESPIRSVADLKGKKVATGRGWNVQFLLLKALEEVGLSYRDIEPVYV 172 Query: 169 -KPADQVAAWKRGDIDAAYVWGPFTQQFEADGGHEIFVTKQLQKDGYLVYNN---FVVRK 224 AD AA++ G++DAA +W PF G E+ ++ +DG + NN + Sbjct: 173 TNAADVRAAFQSGNVDAATLWDPFL------AGQELATRPRILRDGTGLSNNRTFHLAVP 226 Query: 225 EFAEKYPQLVVKFLRTYQEKVDQYKKDPDGSAQLIAKHLDI 265 F +++ +V ++ + P +A+L+A L + Sbjct: 227 SFVDRHKDIVRTVFAELKKTNQWTQSHPQETAELLAPQLGV 267 >gi|300310819|ref|YP_003774911.1| nitrate/sulfonate/bicarbonate ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 319 Score = 57.8 bits (138), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 57/228 (25%), Positives = 97/228 (42%), Gaps = 10/228 (4%) Query: 52 DKSFDKSFGAP-VKWIPFATGADVLSLFAAKEIDIARFGSSPAVAGIARKLPIEIISVPE 110 +K F K +GAP V + G + L+ A ++++ G + +AR + ++V Sbjct: 57 EKLFAK-YGAPNVSVQSYTDGGEALNALVANQVNLGCAGEPTHIVRLARA-ELRPLAVTY 114 Query: 111 VIATSERLIGRKSKNINSIKDIEGKTVAYPPNSTAQYALELAIKVNRLDKSKIRLVPLKP 170 T +L+ RK +I + I + S ++Y L I+ +LD SKI +V P Sbjct: 115 QSRTYLKLVARK--DIATADKIRKFGIVV--GSVSEYVTGLTIRQLKLDASKIEMVRSGP 170 Query: 171 ADQVAAWKRGDIDAAYVWGPFTQQFEADGGHEIFVTKQLQKDGYLVYNNFVVRKEFAEKY 230 + A RGDIDA +VW P+ GGH + + GY + Sbjct: 171 PELPALLARGDIDAYFVWEPWPTLGVQQGGHILMTCGDV---GYTSTLWLSATAPWLAAN 227 Query: 231 PQLVVKFLRTYQEKVDQYKKDPDGSAQLIAKHLDIPFETARSVLTGLE 278 ++ + L+ E + +KDP +AQ + IP + L +E Sbjct: 228 KEVAGRILKALAEAAEITRKDPPRAAQSVQAITRIPIPQTLNSLKDME 275 >gi|300310915|ref|YP_003775007.1| alkanesulfonates ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] Length = 336 Score = 55.8 bits (133), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 36/133 (27%), Positives = 59/133 (44%) Query: 59 FGAPVKWIPFATGADVLSLFAAKEIDIARFGSSPAVAGIARKLPIEIISVPEVIATSERL 118 GA VKW+ F+ G L A ID G +P + A P+ + E + Sbjct: 78 LGATVKWVEFSAGPVQLEALGAGSIDFGDVGEAPPIFAQAAGTPLVYVGATVPRPYVEAV 137 Query: 119 IGRKSKNINSIKDIEGKTVAYPPNSTAQYALELAIKVNRLDKSKIRLVPLKPADQVAAWK 178 + + + + ++GK +A S Y L ++ + L + V L PAD AA++ Sbjct: 138 LVKDDSELQRPQQLKGKRIALNKGSNVHYFLVKLLEKHGLKYGDVTPVWLAPADARAAFE 197 Query: 179 RGDIDAAYVWGPF 191 RG +DA +W P+ Sbjct: 198 RGAVDAWAIWEPY 210 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.317 0.133 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,060,945 Number of extensions: 44074 Number of successful extensions: 132 Number of sequences better than 1.0e-08: 8 Number of HSP's gapped: 130 Number of HSP's successfully gapped: 8 Length of query: 343 Length of database: 1,619,870 Length adjustment: 86 Effective length of query: 257 Effective length of database: 1,212,660 Effective search space: 311653620 Effective search space used: 311653620 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)