BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0277.p
         (338 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309493|ref|YP_003773585.1| delta-aminolevulinic acid dehyd...   561   e-161

>gi|300309493|ref|YP_003773585.1| delta-aminolevulinic acid
           dehydratase [Herbaspirillum seropedicae SmR1]
          Length = 339

 Score =  561 bits (1447), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 272/319 (85%), Positives = 292/319 (91%)

Query: 1   MSLTSTSTSAQFPAIRMRRMRKDAFSRAMMQENVITPADLIYPVFIQEGQNLRTPVGSLP 60
           MSLT  S++A +PA+RMRRMR+DAFSRA+M ENVIT ADLIYPVF+QEGQNLRTPV SLP
Sbjct: 1   MSLTDFSSNAGYPALRMRRMRRDAFSRALMAENVITSADLIYPVFVQEGQNLRTPVASLP 60

Query: 61  GVERLSIDQLLHVAEDTVALGIPVLALFPVIDVALKTPDGIEAINPDGLVPRAVAALKQR 120
           GVERLS+D LL VAE+ V LG+PVLALFPVID ALKTPDGIEA NPDGLVPR V ALK R
Sbjct: 61  GVERLSLDTLLPVAEECVKLGVPVLALFPVIDPALKTPDGIEATNPDGLVPRVVRALKDR 120

Query: 121 FPELGILTDVALDPYTSHGQDGVMDDNGYVLNDETTALLVRQALAQAQAGVDIVAPSDMM 180
           FPELG+L DVALDPYTSHGQDGV+D+ GY+LNDET ALLV+QA  QA AGVD+VAPSDMM
Sbjct: 121 FPELGVLCDVALDPYTSHGQDGVLDETGYILNDETLALLVKQAQTQADAGVDVVAPSDMM 180

Query: 181 DGRIGAVRDALEAEKFIYTRIMAYSAKYASAFYGPFRDAVGSAANLGKGSKSTYQMDPAN 240
           DGRI A+R  LEA+  IYTRIMAYSAKYASAFYGPFRDAVGSAANLGKGSK+TYQMDPAN
Sbjct: 181 DGRIAAIRAMLEAQDHIYTRIMAYSAKYASAFYGPFRDAVGSAANLGKGSKATYQMDPAN 240

Query: 241 SDEALREVALDLQEGADMVMVKPGMPYLDIVRRVKDEFKVPTFAYQVSGEYAMIKAAAQN 300
           SDEALREVALDLQEGADMVMVKPGMPYLDIVRRVKDEF+VPTFAYQVSGEYAMIKAAAQN
Sbjct: 241 SDEALREVALDLQEGADMVMVKPGMPYLDIVRRVKDEFRVPTFAYQVSGEYAMIKAAAQN 300

Query: 301 GWLDHDKAMMEAMMAFKRA 319
           GWLDHDK MMEAMMAFKRA
Sbjct: 301 GWLDHDKTMMEAMMAFKRA 319


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.133    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,025,335
Number of extensions: 42799
Number of successful extensions: 132
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 132
Number of HSP's successfully gapped: 1
Length of query: 338
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 252
Effective length of database: 1,212,660
Effective search space: 305590320
Effective search space used: 305590320
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)