BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0276.p
         (241 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309494|ref|YP_003773586.1| GTP-binding protein [Herbaspiri...   417   e-118

>gi|300309494|ref|YP_003773586.1| GTP-binding protein
           [Herbaspirillum seropedicae SmR1]
          Length = 246

 Score =  417 bits (1071), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 194/219 (88%), Positives = 207/219 (94%)

Query: 1   MSQLWQARFFTTVNHLRDLPNTKVPEIAFAGRSNAGKSTAINVLCNQKKLAFASKTPGRT 60
           MSQLWQARFFTTVNHLRDLP T VPEIAFAGRSNAGKS+AINVLCNQK+LAFASKTPGRT
Sbjct: 1   MSQLWQARFFTTVNHLRDLPKTSVPEIAFAGRSNAGKSSAINVLCNQKRLAFASKTPGRT 60

Query: 61  QHINYFSIGGAHVAQHRKDETKVDEIRALLVDLPGYGYAQVSGSAKLHWQELLGDYVRRR 120
           QHINYFSIGGAHV QHR DE + DEIRA+LVDLPGYGYA+VSGSAK HWQ LLGDYVR+R
Sbjct: 61  QHINYFSIGGAHVGQHRNDEARPDEIRAMLVDLPGYGYAEVSGSAKHHWQALLGDYVRQR 120

Query: 121 DQLAALVMIVDSRRPFTDLDIQMVEWFAPTGKPLHCILSKADKLNRNDATNALRQAHTFL 180
           +QLAALVMIVDSRRPFTDLDIQM+EWFAPTGKP+HCILSKADKLNRN++TNALRQA T+L
Sbjct: 121 EQLAALVMIVDSRRPFTDLDIQMIEWFAPTGKPIHCILSKADKLNRNESTNALRQAQTYL 180

Query: 181 SSYVDAKGEPFPFTAQLFSALKRTGLEEANDKILELAGL 219
            SYVD KG+PFPFTAQLFSALKR GLEEANDKILELAGL
Sbjct: 181 QSYVDEKGQPFPFTAQLFSALKRIGLEEANDKILELAGL 219


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.132    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 779,396
Number of extensions: 31327
Number of successful extensions: 125
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 127
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 158
Effective length of database: 1,226,865
Effective search space: 193844670
Effective search space used: 193844670
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 129 (54.3 bits)