BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0275.p
         (167 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309495|ref|YP_003773587.1| cytochrome c553 protein [Herbas...   238   2e-64
gi|300310720|ref|YP_003774812.1| cytochrome c553 protein [Herbas...    71   4e-14

>gi|300309495|ref|YP_003773587.1| cytochrome c553 protein
           [Herbaspirillum seropedicae SmR1]
          Length = 220

 Score =  238 bits (607), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 109/137 (79%), Positives = 125/137 (91%)

Query: 31  KXITDFRTAGRSNPIMSPLAKALSDEDVKNIAAYLNAQAPKPGAAKSKDTLELGKQIWRG 90
           K + +FRT  R+NP+MSP+AKALSDED+ N+AA+L AQAPKPGAAK+KDT++LGK IWR 
Sbjct: 84  KQLLNFRTPDRNNPVMSPMAKALSDEDIHNVAAFLAAQAPKPGAAKNKDTIDLGKHIWRA 143

Query: 91  GIASKNVPACAGCHSPNGAGIPAQYPRLAGQHQDYTVTELTAFRGGTRSNSPQMTTIADR 150
           GIA+KNVPACAGCHSPNGAGIPAQYPRLAGQHQDYTV +LT FRGG R+NS QMTTI++R
Sbjct: 144 GIAAKNVPACAGCHSPNGAGIPAQYPRLAGQHQDYTVAQLTNFRGGARTNSVQMTTISER 203

Query: 151 LSDKEIKAVADYIAGLK 167
           LSDKEIKAVADYIAGLK
Sbjct: 204 LSDKEIKAVADYIAGLK 220



 Score = 62.8 bits (151), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 31/81 (38%), Positives = 48/81 (59%), Gaps = 1/81 (1%)

Query: 84  GKQIWRGGIASKNVPACAGCHSPNGAGIPAQYPRLAGQHQDYTVTELTAFRGGTRSNSPQ 143
           G+ ++  G +++N+ AC  CH   G     Q P+LAGQH+ Y   +L  FR   R N+P 
Sbjct: 40  GEALYTNGDSARNIVACVSCHGAAGNSTITQNPKLAGQHEAYIAKQLLNFRTPDR-NNPV 98

Query: 144 MTTIADRLSDKEIKAVADYIA 164
           M+ +A  LSD++I  VA ++A
Sbjct: 99  MSPMAKALSDEDIHNVAAFLA 119


>gi|300310720|ref|YP_003774812.1| cytochrome c553 protein
           [Herbaspirillum seropedicae SmR1]
          Length = 252

 Score = 71.2 bits (173), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 49/157 (31%), Positives = 81/157 (51%), Gaps = 10/157 (6%)

Query: 18  AGGFFRSICSRRKKXITD----FRTAGRSNPIMSPLAKALSDEDVKNIAAYLNAQAPK-- 71
           A G++  I  + +  + +    FR   R  P+M+ L   LSD+ ++ IA +   Q P   
Sbjct: 64  ADGYYPRIAGKPEAYLLNQLQSFRDGQRRYPMMNYLLANLSDDYLQQIARFFADQHPPYP 123

Query: 72  PGAAK--SKDTLELGKQIWRGGIASKNVPACAGCHSPNGAGIPAQYPRLAGQHQDYTVTE 129
           P A+   S   LE G+++   G   + +PACA CH+P+  G+    P L G  +DY   +
Sbjct: 124 PPASNEASATVLERGRRLVTEGDPQRRLPACAACHAPSLGGVQPGIPGLLGLPRDYINAQ 183

Query: 130 LTAFRGGTRS-NSPQ-MTTIADRLSDKEIKAVADYIA 164
           L A+R G R+  +P  M  +A  LS +EI A + +++
Sbjct: 184 LGAWRNGDRTAKTPDCMAAVARALSPEEINAASSWLS 220


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.132    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 524,817
Number of extensions: 20886
Number of successful extensions: 89
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 92
Number of HSP's successfully gapped: 3
Length of query: 167
Length of database: 1,619,870
Length adjustment: 79
Effective length of query: 88
Effective length of database: 1,245,805
Effective search space: 109630840
Effective search space used: 109630840
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 127 (53.5 bits)