BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0273.p
         (707 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309496|ref|YP_003773588.1| cytochrome C-type biogenesis tr...  1061   0.0  

>gi|300309496|ref|YP_003773588.1| cytochrome C-type biogenesis
           transmembrane protein [Herbaspirillum seropedicae SmR1]
          Length = 688

 Score = 1061 bits (2744), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 505/683 (73%), Positives = 589/683 (86%), Gaps = 3/683 (0%)

Query: 27  MRFAISLLTLIAVASIIGTVLQQNQPMPNYVNQFGPFWFEVFGKLGLYAVYSAWWFLLIM 86
           MRFAISLLTLIA+AS+IGTV++QN+PMPNYVNQFGPFWFEVFGKLGLYAVYSAWWFLLIM
Sbjct: 1   MRFAISLLTLIAIASVIGTVMKQNEPMPNYVNQFGPFWFEVFGKLGLYAVYSAWWFLLIM 60

Query: 87  GFLVLSTSLCIARNGPKMLKDISSWRENVREQSLRNFHHKAEWTAATPVAGMAQQLVQRI 146
           GFLVLSTSLCIARN PKML+D+ SWR+NVREQSLRNFHHK EW  A   A  A +LV+++
Sbjct: 61  GFLVLSTSLCIARNAPKMLRDVKSWRDNVREQSLRNFHHKHEWHTAEAPAQAAARLVRQV 120

Query: 147 GANGYKVKLLEKDGATLIAAKKGAANKLGYIFAHSAIVIICLGGLLDSDLPIRFQQWFYG 206
           GA GYK +L +K+G TL+AAK+GAANK GYIFAH+AIVIICLGGLLDSDLPIRFQQWFYG
Sbjct: 121 GARGYKTRLADKEGGTLLAAKQGAANKWGYIFAHAAIVIICLGGLLDSDLPIRFQQWFYG 180

Query: 207 KTPFAGNGVISQIPAEHRLGLGNPTFRGNTLIPEGASSSTAIIPQQNGVMIQDLPFTIQL 266
           K+ F GNG+I++IP  +RLGL NPTFRGNTLIPEG+SSSTAIIPQ++GVMIQDLPFTI+L
Sbjct: 181 KSAFTGNGIIAEIPERYRLGLNNPTFRGNTLIPEGSSSSTAIIPQKDGVMIQDLPFTIRL 240

Query: 267 KRFVIDYYSTGMPKLFASDVIVRDNATGKDFAATIKVNEPLIYNGIAVYQSSFEDGGSKL 326
           KRF+ID+YSTGMPKLFAS+V+VRD+ TGK+ AATIKVNEPLIY G+A+YQSSFEDGGSKL
Sbjct: 241 KRFIIDFYSTGMPKLFASEVVVRDHETGKETAATIKVNEPLIYQGVAIYQSSFEDGGSKL 300

Query: 327 RLTGHAMTGADDKRFEIAGEVNGSTPLSAAKDNEYTVEWSGFRPFNVENMNNNGNNANSG 386
           +L G+ M G  +  F ++G VNGST L A    +YT+EWSGFRPFNVENM  +G   ++ 
Sbjct: 301 KLVGYPMRGGSNSHFALSGVVNGSTALPAGL-GDYTIEWSGFRPFNVENMQASGGGGSTS 359

Query: 387 NSGDVRSVNKSVNKSFADGLDKHLGSGAKNANSKDLKNVGPSVQYKLRDKTGQAREFLNY 446
                 +V KSVN+   D LDKHLGS AKNANSKD KNVGPSVQYKLRDKTGQARE+ NY
Sbjct: 360 GDARAVNVGKSVNRGLMDSLDKHLGSSAKNANSKDFKNVGPSVQYKLRDKTGQAREYFNY 419

Query: 447 MQPVQVDGAYVFLAGVRDMPDEPFRYLRIPADDEDSVDEWMRLRAALANPALRAEAAARY 506
           MQ + +DGAYVFLAG+R+ PD+PFRYLRIPADD DSV EWMRLRAALANPALR EAA RY
Sbjct: 420 MQSLSIDGAYVFLAGMREQPDQPFRYLRIPADDNDSVAEWMRLRAALANPALREEAARRY 479

Query: 507 ARQAMKGDDANARQLRDQVQQSALRGLSIFAGDGKESGYIAVSRFIEKIPAAEQEKAADI 566
           ARQA+      +  LR+Q+QQSALRGL+IFAGDGK SGYIAV+RF+E++PAAEQEKAADI
Sbjct: 480 ARQAISNGREASPVLREQLQQSALRGLTIFAGDGKVSGYIAVTRFLEQLPAAEQEKAADI 539

Query: 567 FMKILNGSMWELWQVAREKAGLKAMGTDEKHARFLQLAINAMADAGFYHAPVYLKLNGFD 626
           FMKILNGSMWELWQ AR + GL+ + +DE H R+LQLAINA+ADA FY APV+L+L+ F+
Sbjct: 540 FMKILNGSMWELWQAARAQDGLEPVASDEPHGRYLQLAINALADAAFYPAPVFLQLSSFE 599

Query: 627 EIKASVFQVTRSPGKKVVYLGCLFLVLGVFSMLYIRERRLWVWIRPQAG--GSHSLMAMS 684
           EIKASV QVTRSPGKKVVYLGCLFLVLGVF+MLYIRERRLW+WI+P A   GS +L+AMS
Sbjct: 600 EIKASVLQVTRSPGKKVVYLGCLFLVLGVFAMLYIRERRLWIWIKPAADGQGSQALLAMS 659

Query: 685 TQRKTMDFEKEFELLKAKLTQTA 707
           TQR+T+DF+KEFE +KA+++  A
Sbjct: 660 TQRRTLDFDKEFEQMKARVSGDA 682


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.135    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,102,588
Number of extensions: 87112
Number of successful extensions: 223
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 221
Number of HSP's successfully gapped: 1
Length of query: 707
Length of database: 1,619,870
Length adjustment: 92
Effective length of query: 615
Effective length of database: 1,184,250
Effective search space: 728313750
Effective search space used: 728313750
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 134 (56.2 bits)