BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0272.p
         (385 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309497|ref|YP_003773589.1| ABC transporter permease [Herba...   672   0.0  

>gi|300309497|ref|YP_003773589.1| ABC transporter permease
           [Herbaspirillum seropedicae SmR1]
          Length = 384

 Score =  672 bits (1734), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 334/385 (86%), Positives = 360/385 (93%), Gaps = 1/385 (0%)

Query: 1   MELSQTHARAELQDIGFFKRLSVLDWIYAAALVAASLFALSRYGGHMDYYEKAVLLLAAP 60
           MEL+Q H +A  ++ GFF+RL VLDWIYAAALVA SL+A  R+G +MDYYEKAVLLLAAP
Sbjct: 1   MELTQ-HNQAYAEEQGFFRRLGVLDWIYAAALVAGSLYAFGRFGSYMDYYEKAVLLLAAP 59

Query: 61  TFAWLGWHWKSVRWLMALLAVLALSAIAMYGGALDMADKKFFLKYLLSSQSAILWMSALF 120
           TFAWLGWHWK VR LM ++AVL+L AIA+YGGAL++ADKKFFLKY+LSSQSAILWMSALF
Sbjct: 60  TFAWLGWHWKPVRLLMLVIAVLSLGAIALYGGALELADKKFFLKYMLSSQSAILWMSALF 119

Query: 121 VLSTLFYWVGLVARSGTGAALGSKLCWAAVVLGFTGMLVRWYESYLIGPDIGHIPISNLY 180
            LSTLFYW GL   +GTG A+GS+LCWAAVVLGFTG++VRWYESYLIGPD+GHIPISNLY
Sbjct: 120 CLSTLFYWGGLATTAGTGNAIGSRLCWAAVVLGFTGLMVRWYESYLIGPDVGHIPISNLY 179

Query: 181 EVFILFCMITALFYLYYEERYATRQLGAFVLLVISAAVGFLLWYTVSRDAAEIQPLVPAL 240
           EVF+LFC+ITALFYLYYEERYATRQLGAFVL VI+AAV FL+WYTVSRDAAEIQPLVPAL
Sbjct: 180 EVFVLFCLITALFYLYYEERYATRQLGAFVLTVITAAVAFLMWYTVSRDAAEIQPLVPAL 239

Query: 241 QSWWMKIHVPANFIGYGTFALAAMVAVAYLLKSKGYLEDRLPSLEVLDDVMYKAIAVGFA 300
           QSWWMKIHVPANFIGYGTFALAAMVAVAYLL+ KGYL DRLPSLEVLDDVMYKAIAVGFA
Sbjct: 240 QSWWMKIHVPANFIGYGTFALAAMVAVAYLLRQKGYLADRLPSLEVLDDVMYKAIAVGFA 299

Query: 301 FFTIATILGALWAAEAWGGYWSWDPKETWALIVWLNYAAWLHMRLMKGLRGQVAAWWALV 360
           FFTIATILGALWAAEAWGGYWSWDPKETWALIVWLNYAAWLHMRLMKGLRGQ AAWWALV
Sbjct: 300 FFTIATILGALWAAEAWGGYWSWDPKETWALIVWLNYAAWLHMRLMKGLRGQAAAWWALV 359

Query: 361 GLLVTTFAFLGVNMFLSGLHSYGEL 385
           GLLVTTFAFLGVNMFLSGLHSYGEL
Sbjct: 360 GLLVTTFAFLGVNMFLSGLHSYGEL 384


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.329    0.139    0.461 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,135,597
Number of extensions: 43609
Number of successful extensions: 240
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 239
Number of HSP's successfully gapped: 2
Length of query: 385
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 298
Effective length of database: 1,207,925
Effective search space: 359961650
Effective search space used: 359961650
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 131 (55.1 bits)