BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0268.p
         (326 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312355|ref|YP_003776447.1| sulfite oxidase [Herbaspirillum...   502   e-143
gi|300310652|ref|YP_003774744.1| oxidoreductase, molybdopterin-b...    71   1e-13

>gi|300312355|ref|YP_003776447.1| sulfite oxidase [Herbaspirillum
           seropedicae SmR1]
          Length = 322

 Score =  502 bits (1292), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 246/326 (75%), Positives = 275/326 (84%), Gaps = 4/326 (1%)

Query: 1   MFIKRQLRNIDVPLPSEITPRALFESRRDFMRHVAVGSIAGGALLETMTQPALAQTPGAQ 60
           M IK +   I++P  SEITP+ ++ SRR FM  VA G+    A        A AQ    +
Sbjct: 1   MLIKIRPDQIEIPTASEITPKDVYLSRRSFMARVAAGAAL--AGGMGALPQAFAQQ--GR 56

Query: 61  KLTAKANSAYVVMDKQTSFKDASTYNNFYEFGTDKGDPAQNAGTLKTRPWTIAIEGEVKK 120
           KL AK N+AY VMDKQT++KDA++YNNFYEFGTDK DPA+NAGTLKT PWTI IEGEVKK
Sbjct: 57  KLPAKLNNAYAVMDKQTAYKDATSYNNFYEFGTDKADPAKNAGTLKTSPWTIDIEGEVKK 116

Query: 121 PLTLDIDALLKLAPLEERIYRLRCVEGWSMVIPWIGYSLSELIKKAEPTGNAKYIEFVTL 180
           P TLD+DAL KLAPLEERIYRLRCVEGWSMVIPWIGYSLS LIKKAEPTGNAKY+EFVTL
Sbjct: 117 PFTLDLDALTKLAPLEERIYRLRCVEGWSMVIPWIGYSLSALIKKAEPTGNAKYVEFVTL 176

Query: 181 DDKKQMPGVYERVLQWPYTEGLRLDEANHPLTLLTVGMYGEVLPNQNGAPVRVVVPWKYG 240
            DKKQMPG+ + +L WPY EGLRLDEANHPLTLLT+GMYGEVLPNQNGAPVR++VPWKYG
Sbjct: 177 ADKKQMPGLSDPILNWPYREGLRLDEANHPLTLLTLGMYGEVLPNQNGAPVRIIVPWKYG 236

Query: 241 FKSAKSIVKIRFLKEQPKTAWNVSAPHEYGFYSNVNPNVDHPRWSQASERRIGEDGFLSR 300
           FKSAKSIVKIRF+K++PKTAWN+ AP EYGFYSNVNP VDHPRWSQA+ERRIGEDGF + 
Sbjct: 237 FKSAKSIVKIRFVKDEPKTAWNLYAPQEYGFYSNVNPGVDHPRWSQATERRIGEDGFFAP 296

Query: 301 KRKTLMFNGYNEVAPLYAGMDLKKFF 326
           KRKTLMFNGYNEVA LY GMDL+KFF
Sbjct: 297 KRKTLMFNGYNEVAGLYTGMDLRKFF 322


>gi|300310652|ref|YP_003774744.1| oxidoreductase,
           molybdopterin-binding protein [Herbaspirillum
           seropedicae SmR1]
          Length = 258

 Score = 71.2 bits (173), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 54/192 (28%), Positives = 79/192 (41%), Gaps = 29/192 (15%)

Query: 85  YNNFY-EFGTDKGDPAQNAGTLKTRPWTIAIEGEVKKPLTLDIDALLKLAPLEERIYRLR 143
           +N FY EF         NA  +    W + + G V    +  ++ L  L P   +I R  
Sbjct: 95  FNAFYDEF---------NAPDIDGSDWKLEVSGLVSDKRSWTLERLRAL-PQAGQITRHI 144

Query: 144 CVEGWSMVIPWIGYSLSELIKKAEPTGNAKYIEFVTLDDKKQMPGVYERVLQWPYTEGLR 203
           C+EGWS +  W G  L   ++       A+Y+ F   D                Y   L 
Sbjct: 145 CIEGWSAIGQWSGVPLRLFLQAVGADLTARYVGFKCADR---------------YYSSLD 189

Query: 204 LDEANHPLTLLTVGMYGEVLPNQNGAPVRVVVPWKYGFKSAKSIVKIRFLKEQPKTAWNV 263
           +  A HP T+L +    E LP Q G P++V VP K GFK+ K +V I    + P   W  
Sbjct: 190 MPTALHPQTILALDFGKEALPTQYGYPLKVRVPTKLGFKNPKHVVAIFVSNQNPGGYWED 249

Query: 264 SAPHEYGFYSNV 275
                Y ++S +
Sbjct: 250 QG---YNWFSGI 258


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.135    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,066,504
Number of extensions: 44842
Number of successful extensions: 99
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 97
Number of HSP's successfully gapped: 2
Length of query: 326
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 241
Effective length of database: 1,217,395
Effective search space: 293392195
Effective search space used: 293392195
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)