BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0267.p
         (207 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312354|ref|YP_003776446.1| sulfite oxidase transmembrane s...   269   1e-73

>gi|300312354|ref|YP_003776446.1| sulfite oxidase transmembrane
           subunit YedZ protein [Herbaspirillum seropedicae SmR1]
          Length = 212

 Score =  269 bits (687), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 132/205 (64%), Positives = 161/205 (78%)

Query: 3   ALRNLKPRQVGILKGVLFVLALLPFVRLIAFGFLDRLGANPIEFITRNTGDWTLYFLCIT 62
           AL NLKPR V  L  +   LA LP +RL+  GF   LGANP+EFIT +TGDWTLY  C+T
Sbjct: 7   ALHNLKPRTVTGLWWLFLALACLPLLRLVILGFTGGLGANPLEFITHSTGDWTLYLFCLT 66

Query: 63  LAVTPLRRLTGWNWLIRLRRMLGLFSFFYVVLHFMTFFWFDHFFDVEEMWRDVIKRPFIT 122
           LAVTPLR+LTG NWL+R+RRMLGL +FFY+ LHF TF WFDHFFD+ E+W+D++KRPFIT
Sbjct: 67  LAVTPLRKLTGLNWLVRMRRMLGLMAFFYLCLHFTTFVWFDHFFDLGEIWKDILKRPFIT 126

Query: 123 VGFIAFVLLIPLAATSTNAMVRRLGAKRWLWLHRLMYLILPLGILHFWWMKAGKNLLAQP 182
           VG IA +L IPLA TSTN MVRRLG KRW  LHRL+YLI+PLG+LH+WW KAGKNL+AQP
Sbjct: 127 VGVIALLLSIPLALTSTNGMVRRLGGKRWQALHRLVYLIVPLGVLHYWWDKAGKNLIAQP 186

Query: 183 ILFATIVTSLLLLRMFFKFRSRKTP 207
           +LFA +V  +L+LR+ ++      P
Sbjct: 187 LLFAVLVGLMLVLRLVWRKGRAARP 211


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.338    0.149    0.505 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 607,263
Number of extensions: 23707
Number of successful extensions: 124
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 124
Number of HSP's successfully gapped: 1
Length of query: 207
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 126
Effective length of database: 1,236,335
Effective search space: 155778210
Effective search space used: 155778210
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.8 bits)
S2: 128 (53.9 bits)