BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0264.p
         (154 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309501|ref|YP_003773593.1| hypothetical protein Hsero_0159...   214   2e-57

>gi|300309501|ref|YP_003773593.1| hypothetical protein Hsero_0159
           [Herbaspirillum seropedicae SmR1]
          Length = 149

 Score =  214 bits (545), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 106/149 (71%), Positives = 127/149 (85%), Gaps = 2/149 (1%)

Query: 6   RASLILSTLILGSAAAAPAFALDFKSVGAAPAVLYDAPSEKGRRVFVAPRGMPVEVVLTY 65
           R  LILS  +LG+  A  A ALDFKSVGAAPA++YDAPSEKGRRV+VAPRGMPVEVVLTY
Sbjct: 3   RLPLILSATLLGAFLAKDALALDFKSVGAAPAIMYDAPSEKGRRVYVAPRGMPVEVVLTY 62

Query: 66  GEWSKVRDAAGTLSWVMSKSLTTKRNVVVSVANAKVHAAADDNSATVFSADKNVLLELTD 125
           GEWSKVRDAAGTLSWV SK+LT KR +VVS ANA+V+ AAD++S  VF+ADK+VLLE+ +
Sbjct: 63  GEWSKVRDAAGTLSWVSSKALTPKRMLVVSAANARVYNAADESSPVVFTADKSVLLEMLE 122

Query: 126 ATPVSGGWIKVKHRDGQSGFVKASEVWGD 154
           +   + GW+KV+HRDGQ+GFVKA +VWGD
Sbjct: 123 SP--NNGWVKVRHRDGQTGFVKAGDVWGD 149


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.128    0.373 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 444,880
Number of extensions: 15334
Number of successful extensions: 59
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 58
Number of HSP's successfully gapped: 1
Length of query: 154
Length of database: 1,619,870
Length adjustment: 77
Effective length of query: 77
Effective length of database: 1,255,275
Effective search space: 96656175
Effective search space used: 96656175
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 126 (53.1 bits)