BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0261.p
         (138 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309504|ref|YP_003773596.1| transmembrane protein [Herbaspi...   210   4e-56
gi|300309823|ref|YP_003773915.1| rhodanese-related sulfurtransfe...    58   3e-10

>gi|300309504|ref|YP_003773596.1| transmembrane protein
           [Herbaspirillum seropedicae SmR1]
          Length = 137

 Score =  210 bits (534), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 97/136 (71%), Positives = 117/136 (86%)

Query: 1   VKFIVDNIFLIGLVIISGGALLIPFLQQRGSKLTLLQATQLINTGKTLVLDVRDVEQFNA 60
           +KFI+DNIFLI L ++SGGALL+P+LQQRG+KL+LLQATQ+IN GK LVLDVR+ EQF A
Sbjct: 1   MKFIIDNIFLIALALVSGGALLVPYLQQRGNKLSLLQATQMINQGKVLVLDVREAEQFAA 60

Query: 61  AHLRDARNIPLKDLSQRVAELDKFKGKNVIVVCQSGTQTAKAEGLLKKAGFTEVHGLTGG 120
            HLRDARNIPLK+L QR+ ELDK KG+ VIVVCQ+GTQ  +AE  LKKAGF+EV+GL GG
Sbjct: 61  GHLRDARNIPLKELPQRIGELDKLKGRPVIVVCQTGTQANRAEATLKKAGFSEVYGLNGG 120

Query: 121 IAAWQAQGLPTASQKA 136
           IAAWQ QGLP  +++A
Sbjct: 121 IAAWQGQGLPLTTKEA 136


>gi|300309823|ref|YP_003773915.1| rhodanese-related
           sulfurtransferase [Herbaspirillum seropedicae SmR1]
          Length = 107

 Score = 57.8 bits (138), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 51/87 (58%), Gaps = 5/87 (5%)

Query: 48  LVLDVRDVEQFNAAHLRDARNIPLKDLSQRVAELDKFKGKNVIVVCQSGTQTAKAEGLLK 107
           L+LDVR+  +    H+  ++ +P+  +  R +ELD+   + V+ +C  G ++ +    L+
Sbjct: 22  LLLDVREPWEHQTCHIAGSQLVPMNTIPGRFSELDE--EQPVVCICHHGGRSMQVAAFLE 79

Query: 108 KAGFTEVHGLTGGIAAWQAQ---GLPT 131
           + GFT+V  L+GG+ AW +Q    +PT
Sbjct: 80  RQGFTKVINLSGGVHAWASQVDPAMPT 106


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.136    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 416,528
Number of extensions: 14975
Number of successful extensions: 74
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 73
Number of HSP's successfully gapped: 2
Length of query: 138
Length of database: 1,619,870
Length adjustment: 76
Effective length of query: 62
Effective length of database: 1,260,010
Effective search space: 78120620
Effective search space used: 78120620
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 126 (53.1 bits)