BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0257.p
         (356 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309507|ref|YP_003773599.1| carboxy-terminal processing pro...   595   e-171

>gi|300309507|ref|YP_003773599.1| carboxy-terminal processing
           protease transmembrane protein [Herbaspirillum
           seropedicae SmR1]
          Length = 498

 Score =  595 bits (1534), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 293/345 (84%), Positives = 319/345 (92%)

Query: 1   MGSKLKNVGLISLGMIAGVAASMQFDAIAQKNATAPLPLEELRQLTDVFGLIKSDYVEPV 60
           MGSKLKN+GLI LGM+AG  A +QFDAIAQKNATA LPLEELRQ+ DVFGLIKSDYVE V
Sbjct: 1   MGSKLKNIGLIGLGMVAGATAMIQFDAIAQKNATASLPLEELRQMADVFGLIKSDYVEQV 60

Query: 61  EDKKLLTEAISGMVASLDPHSAYLDKKAYKELREGTMGKFVGLGIEVGMEDGYVKVISPI 120
           +DKKLLTEAISGMV+SLDPHSAYLDKKAYKELREGTMGKFVGLGIEVGMEDGYVKVISPI
Sbjct: 61  DDKKLLTEAISGMVSSLDPHSAYLDKKAYKELREGTMGKFVGLGIEVGMEDGYVKVISPI 120

Query: 121 EDSPAYRAGIKAGDLITRLDATPVKGLTLDEAVKKMRGEPNTKITLTIARKDEDKPIILS 180
           EDSPA+RAGIKAGDLITRLD+TPVKGLTLDEAVKKMRGEPNTKITLTIARKDEDKPIIL+
Sbjct: 121 EDSPAFRAGIKAGDLITRLDSTPVKGLTLDEAVKKMRGEPNTKITLTIARKDEDKPIILT 180

Query: 181 ITRQEIRVQSVKSKVVEPGYAWLRVTQFQEPTVDDMTKKILAIYAQEPNLKGLVLDLRND 240
           ITRQEIRVQSVKSKVVEPGYAWLRVTQFQEPTVDDM+KK+ AIYAQEPNLKG+VLDLRND
Sbjct: 181 ITRQEIRVQSVKSKVVEPGYAWLRVTQFQEPTVDDMSKKLAAIYAQEPNLKGIVLDLRND 240

Query: 241 PGGVLPGAIGVSATFLPKDAVVVTTNGQLPTSKSSFLAKREFYAANPLNDPLSKLPDAIK 300
           PGGVLPGAIGV+A FLPKD+VVV+TNGQLP+SK +F AKRE+YA+NPL+DPLS+LPDAIK
Sbjct: 241 PGGVLPGAIGVAAAFLPKDSVVVSTNGQLPSSKQTFYAKREYYASNPLSDPLSRLPDAIK 300

Query: 301 KVPLVVLINSGSASASEIVAXINSGSASASEIWRQQRGAGLVRSL 345
           KVP+VVLINSGSASASEIVA        A+ +  Q  G G V+S+
Sbjct: 301 KVPMVVLINSGSASASEIVAGALQDYKRATIMGTQSFGKGSVQSV 345


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.314    0.133    0.366 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,100,050
Number of extensions: 46335
Number of successful extensions: 112
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 111
Number of HSP's successfully gapped: 1
Length of query: 356
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 270
Effective length of database: 1,212,660
Effective search space: 327418200
Effective search space used: 327418200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 131 (55.1 bits)