BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0256.p
         (228 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309507|ref|YP_003773599.1| carboxy-terminal processing pro...   222   2e-59

>gi|300309507|ref|YP_003773599.1| carboxy-terminal processing
           protease transmembrane protein [Herbaspirillum
           seropedicae SmR1]
          Length = 498

 Score =  222 bits (566), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 109/139 (78%), Positives = 121/139 (87%), Gaps = 1/139 (0%)

Query: 88  LTTARYYTPNGRSIQARGIVPDIMVDEYADGDGLNGLRLREADLTKHLTNDKDKDAKEVK 147
           LTTARYYTP GRSIQARGIVPDIMVDEY DGDGLNGLRLREADL+KHLTND DK A EVK
Sbjct: 358 LTTARYYTPKGRSIQARGIVPDIMVDEYPDGDGLNGLRLREADLSKHLTNDTDKSA-EVK 416

Query: 148 ASTVDEKEEERLIALEKKRKPLEFGSKEDFQLAQALNHLKGQPVQVSKVKPEIRDESSKD 207
           A ++DE+ EERLIA EKKRKP++FGSK+DFQL QALN LKG PV+VS  KPE+R+E  K+
Sbjct: 417 AKSMDEQSEERLIAAEKKRKPMDFGSKDDFQLMQALNQLKGLPVKVSNAKPEVRNEEGKN 476

Query: 208 DKPVKDIRKDNKAPPEKIE 226
           D PVKD RKDNKAP EKI+
Sbjct: 477 DTPVKDERKDNKAPAEKID 495


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.314    0.133    0.363 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 699,434
Number of extensions: 29070
Number of successful extensions: 71
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 70
Number of HSP's successfully gapped: 1
Length of query: 228
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 146
Effective length of database: 1,231,600
Effective search space: 179813600
Effective search space used: 179813600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 129 (54.3 bits)