BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0252.p
         (155 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309511|ref|YP_003773603.1| hypothetical protein Hsero_0169...   100   9e-23

>gi|300309511|ref|YP_003773603.1| hypothetical protein Hsero_0169
           [Herbaspirillum seropedicae SmR1]
          Length = 142

 Score = 99.8 bits (247), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 69/147 (46%), Positives = 80/147 (54%), Gaps = 19/147 (12%)

Query: 20  LVRRRRSGRMGLALALASMLLFSQWLGLLHGIAHAGWPEQTQVSPAASTVASFHA-ALFN 78
           L R R      L   LA  LL +Q LG +HGIAHAGW        A  TV S  + ALF+
Sbjct: 4   LHRLRCLHTPALVAILAMSLLLAQMLGFVHGIAHAGW--------APGTVHSLISDALFD 55

Query: 79  YFDAD----AVHPADGKH------HAAHEKQHHSCAEYDAAAGAAGIHVGFFSPPLIPGA 128
             + D    + H   G+       H   +  HHSC  YDAAA +AG H  F   PL+P  
Sbjct: 56  EGEGDDHAASAHVHGGQQQGEDHAHVHADHSHHSCVSYDAAALSAGAHFDFPPLPLMPPV 115

Query: 129 QVLALWQAFASWDAPAVCHFSSRAPPR 155
           +VLALWQAFASWD P  CHFSSRAPPR
Sbjct: 116 RVLALWQAFASWDPPLNCHFSSRAPPR 142


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.132    0.423 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 465,429
Number of extensions: 16195
Number of successful extensions: 88
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 87
Number of HSP's successfully gapped: 1
Length of query: 155
Length of database: 1,619,870
Length adjustment: 78
Effective length of query: 77
Effective length of database: 1,250,540
Effective search space: 96291580
Effective search space used: 96291580
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 126 (53.1 bits)