BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0250.p
         (300 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310315|ref|YP_003774407.1| cysteine synthase B protein [He...   546   e-156

>gi|300310315|ref|YP_003774407.1| cysteine synthase B protein
           [Herbaspirillum seropedicae SmR1]
          Length = 300

 Score =  546 bits (1406), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 260/300 (86%), Positives = 282/300 (94%)

Query: 1   MPYLTIEDTIGNTPLIQLQRLGGEEARRRNNIILGKMEGNNPAGSVKDRAALSMIRRAEE 60
           M Y TIE TIGNTPLI L R+GGEEA+RRNN+ILGK+EGNNPAGSVKDRAA SMI RAE 
Sbjct: 1   MSYPTIESTIGNTPLILLPRIGGEEAKRRNNLILGKLEGNNPAGSVKDRAAFSMITRAEA 60

Query: 61  RGQIKPGDTLIEATSGNTGIALAMVAALRGYKMVLLMPENLSEERRQSMAAYGAKIVLTP 120
           RGQIKPGDTLIEATSGNTGIALAMVAA+RGYKM+LLMPENLSEERRQSMAAYGAKIVLTP
Sbjct: 61  RGQIKPGDTLIEATSGNTGIALAMVAAMRGYKMILLMPENLSEERRQSMAAYGAKIVLTP 120

Query: 121 KSGGMEYARDLAEQMQKEGQGLILDQFANGDNPQAHYETTGPELWRDTEGRITHFVSAMG 180
           KSGGMEYARDLAEQMQK G+GLILDQFAN DNP AHYETTGPE+WRDT+G ITHFVSAMG
Sbjct: 121 KSGGMEYARDLAEQMQKNGEGLILDQFANPDNPLAHYETTGPEIWRDTKGSITHFVSAMG 180

Query: 181 TTGTIMGVSRYLKEQNPGIQIIGAQPEEGSSIPGIRKWPEAYLPKIYEKPRVDQIESVSQ 240
           TTGTIMGV++YLKEQN  +QI+GAQPEEGSSIPGIRKWPEAYLPKI+++ RVDQIESVSQ
Sbjct: 181 TTGTIMGVAQYLKEQNAQVQIVGAQPEEGSSIPGIRKWPEAYLPKIFDRSRVDQIESVSQ 240

Query: 241 AAAENMARKLAMVEGLFCGISAAGACEVALRISQQVENATIVFVVCDRGDRYLSTGVFPA 300
           A AENMARKLA+ EG+FCGISAAGACEVA+R+S Q+ENATIVF+VCDRGDRYLSTGVFPA
Sbjct: 241 ADAENMARKLAVTEGVFCGISAAGACEVAVRLSHQLENATIVFIVCDRGDRYLSTGVFPA 300


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.133    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 938,062
Number of extensions: 39282
Number of successful extensions: 137
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 137
Number of HSP's successfully gapped: 2
Length of query: 300
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 215
Effective length of database: 1,217,395
Effective search space: 261739925
Effective search space used: 261739925
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 130 (54.7 bits)