BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0248.p
         (193 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310316|ref|YP_003774408.1| hypothetical protein Hsero_0983...   259   1e-70

>gi|300310316|ref|YP_003774408.1| hypothetical protein Hsero_0983
           [Herbaspirillum seropedicae SmR1]
          Length = 198

 Score =  259 bits (661), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 127/195 (65%), Positives = 155/195 (79%), Gaps = 4/195 (2%)

Query: 1   MDTAT----FPADDTVISLTQAWVAEAVIGLNLCPFAKSVYVKQQIRYVVSHADNEADLA 56
           M+TA+     P+DD V++LT+AW+ +AVIGLNLCPFAKSV+VK Q+RY VS   +   +A
Sbjct: 4   MNTASPAPAAPSDDQVVALTRAWLEQAVIGLNLCPFAKSVHVKNQVRYRVSKGQDWDGVA 63

Query: 57  QQLLNELQHLQAADPELLDTTLLIHPHVLQDFYDYNNFLDVADQVLEDVELDGVIQIASF 116
             L  EL  L  ADPE +DTTLLI P    DF++YN+FLD AD++LE + LDG +QIASF
Sbjct: 64  ADLEEELALLAKADPEHIDTTLLILPLAFADFHEYNDFLDWADRILERMRLDGELQIASF 123

Query: 117 HPQYQFADALPDDIDNYTNRSPFPILHLLRESSIDRAVAAYPEASAIFERNIATMRDLGL 176
           HP+YQFADA PDDI+NY+NRSPFPILHLLRESSIDRAVAAYP+AS IFERN+AT+R+LGL
Sbjct: 124 HPEYQFADAGPDDIENYSNRSPFPILHLLRESSIDRAVAAYPDASTIFERNMATLRELGL 183

Query: 177 KGWNRLAFVVSKKQH 191
            GWN L FVV+ KQ 
Sbjct: 184 TGWNMLPFVVTNKQR 198


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.135    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 571,888
Number of extensions: 21057
Number of successful extensions: 68
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 68
Number of HSP's successfully gapped: 1
Length of query: 193
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 113
Effective length of database: 1,241,070
Effective search space: 140240910
Effective search space used: 140240910
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)