BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0246.p
         (155 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310318|ref|YP_003774410.1| hypothetical protein Hsero_0985...   172   1e-44

>gi|300310318|ref|YP_003774410.1| hypothetical protein Hsero_0985
           [Herbaspirillum seropedicae SmR1]
          Length = 390

 Score =  172 bits (436), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 111/154 (72%), Positives = 126/154 (81%)

Query: 1   LTPLWTHNDWHASNLLWTDRSAAAGVETILDFGLSDRTCALHDLATAIERNVIEWLAIQE 60
             PLWTHNDWHASNLLW+D S  A V+T+LDFGL DRT ALHDLATAIERN++EWLAI +
Sbjct: 233 FVPLWTHNDWHASNLLWSDASPQAQVQTVLDFGLCDRTTALHDLATAIERNIVEWLAIPQ 292

Query: 61  GKTDAVHPDLLDALLDGYHLVLPLSSRQWRALAALLPLVHAEFALAELAYFHGITRSANN 120
                VH DLLDALLDGY    PLS+RQ RALAALLPLVHAEFALAEL YFHG+T+SA N
Sbjct: 293 RDEQLVHLDLLDALLDGYAAQSPLSARQLRALAALLPLVHAEFALAELDYFHGVTQSAIN 352

Query: 121 AALAYDAYYLGHAAWFNSTAGRALLARITARAEA 154
           A+LAYDAY+LGHAAWF+S  G+ LLA +  RA+A
Sbjct: 353 ASLAYDAYFLGHAAWFHSAEGQRLLAHLHQRADA 386


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.133    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 460,985
Number of extensions: 16785
Number of successful extensions: 62
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 62
Number of HSP's successfully gapped: 1
Length of query: 155
Length of database: 1,619,870
Length adjustment: 78
Effective length of query: 77
Effective length of database: 1,250,540
Effective search space: 96291580
Effective search space used: 96291580
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 126 (53.1 bits)