BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0245.p
         (235 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310318|ref|YP_003774410.1| hypothetical protein Hsero_0985...   234   4e-63

>gi|300310318|ref|YP_003774410.1| hypothetical protein Hsero_0985
           [Herbaspirillum seropedicae SmR1]
          Length = 390

 Score =  234 bits (598), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 117/172 (68%), Positives = 131/172 (76%)

Query: 1   MEAASHHLTRVLSHGMNADAVISDWPALTSAEVARVLLHYPQAGVPKRLVWHSPRPFSAG 60
           M+AASHHLTRV+SHGM AD VISDWPALTSAEVARVL HYP  G P RL WHSPRPFSA 
Sbjct: 1   MDAASHHLTRVISHGMGADPVISDWPALTSAEVARVLRHYPGVGQPLRLEWHSPRPFSAA 60

Query: 61  CVMTTSTMDVFVKRHHVSVRDVAGLSEEHGFINHLRSRGIAVSEVLTTADGATAFTDDHW 120
           CVM T +  + VKRHHV VRDVA L EEH F  HL+ +G+ VS  L TA GATA  DD+W
Sbjct: 61  CVMQTESGPIIVKRHHVRVRDVAALGEEHRFAAHLQEKGLPVSCALATASGATALADDYW 120

Query: 121 TYEVHGVASGVDLYRDAVSWTPFSSSVHAHEAGKALARLHLAAQDYAAPAXA 172
           TYEV  +A+GVDLYR+A+SWTPF S  HA  AG+ L+RLH AA  Y APA A
Sbjct: 121 TYEVFALAAGVDLYREALSWTPFHSCAHAWSAGQMLSRLHQAAAGYEAPARA 172


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.129    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 554,782
Number of extensions: 17428
Number of successful extensions: 51
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 51
Number of HSP's successfully gapped: 1
Length of query: 235
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 153
Effective length of database: 1,231,600
Effective search space: 188434800
Effective search space used: 188434800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)