BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0243.p
         (494 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310320|ref|YP_003774412.1| membrane-bound lytic peptidogly...   501   e-143

>gi|300310320|ref|YP_003774412.1| membrane-bound lytic peptidoglycan
           transglycosylase B protein [Herbaspirillum seropedicae
           SmR1]
          Length = 369

 Score =  501 bits (1291), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 251/372 (67%), Positives = 291/372 (78%), Gaps = 12/372 (3%)

Query: 1   LLRLLGLSALSLACLIPAAVHAESTTRKNQTDKSKSSNTKAKNARQAKPKKKAAPADDGE 60
           LL +LGL A + A     A  A S   K Q  K+      AK        KK +P D GE
Sbjct: 4   LLLVLGLCASASALCADNA--AASKAGKAQQHKTGPKKVVAK--------KKTSPEDQGE 53

Query: 61  FANFSQWKEVNDFIDDMVARNGFDKAALQALFNKARYIDTAIQLIKPAPSGKPKNWQAYR 120
           F NF++WKEV  F+DDMV RN F ++ L +LF + RY+D+AIQLIKPAPS KPKNW AYR
Sbjct: 54  FVNFNEWKEVARFMDDMVERNHFSRSELNSLFAQTRYLDSAIQLIKPAPSNKPKNWFAYR 113

Query: 121 ARFVEPKRINAGVDFWNEHELALSRAEAQYGVPAEIIVGIIGVETVYGRNTGNFRVLDAI 180
           ARFVEP RINAGVDFWN + +AL+RAEAQYGVP EII GIIGVETVYGRNTGNFRV+DAI
Sbjct: 114 ARFVEPVRINAGVDFWNTYGVALARAEAQYGVPMEIIAGIIGVETVYGRNTGNFRVMDAI 173

Query: 181 TTLAFDYPKTANRDARMAFFRGELENTLLFARESNIDPFSLLGSYAGAIGWPQFMPSSIR 240
           +TLAFDYP T NR+ARMAFFRGELENTLL ARE+ IDP +L GSYAGAIGWPQFMP SIR
Sbjct: 174 STLAFDYPNTPNREARMAFFRGELENTLLLAREAGIDPLTLRGSYAGAIGWPQFMPGSIR 233

Query: 241 QYAVDFDGNGKIDLRSSPVDAIGSVANFLKIHGWQRGEPTVFPATV-TDAGKIDNLINQG 299
           +YAVDFDG+GKIDLR+SPVDAIGSVA++L +HGWQRG+P  FP TV T+  + + ++NQG
Sbjct: 234 EYAVDFDGDGKIDLRNSPVDAIGSVAHYLAVHGWQRGQPVAFPVTVSTENRQWEGMLNQG 293

Query: 300 LEAKFSPDELRAAGVVSGSELPAGLRFGLVDLQNGDAPTDHWLATNNFFAITQYNRSYFY 359
           LEAK+S DELRAAGVV  + +PA LRFGLVDLQNG  PT++W+ T NFFAITQYNRSYFY
Sbjct: 294 LEAKYSVDELRAAGVVLPA-VPADLRFGLVDLQNGTNPTEYWIGTANFFAITQYNRSYFY 352

Query: 360 AMSVIDLARGHA 371
           AMSV +L R  A
Sbjct: 353 AMSVAELGRAVA 364


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.135    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,352,342
Number of extensions: 54147
Number of successful extensions: 148
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 146
Number of HSP's successfully gapped: 1
Length of query: 494
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 405
Effective length of database: 1,198,455
Effective search space: 485374275
Effective search space used: 485374275
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 132 (55.5 bits)