BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0242.p
         (313 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310969|ref|YP_003775061.1| deacetylase [Herbaspirillum ser...    83   3e-17

>gi|300310969|ref|YP_003775061.1| deacetylase [Herbaspirillum
           seropedicae SmR1]
          Length = 331

 Score = 82.8 bits (203), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 69/210 (32%), Positives = 95/210 (45%), Gaps = 11/210 (5%)

Query: 101 RAAGAAVAATDAVIAGELENAFCSVRPPGHHATPTTPMGFCLFNNVAIAARHAIDVHGLE 160
           R++GA +AA  A  +   E    ++    HHA      GFC+FN+ AIAAR         
Sbjct: 105 RSSGATIAACRAAFS---EGVAVNLAGGTHHAYGDHGAGFCVFNDAAIAARLMQAERRAA 161

Query: 161 RVAIVDFDVHHGNGTEAAFKHDPRVLMVSFFQHPFYPFSGADPSEPHILNEPLPAYTAGN 220
           RVAIVD DVH GNGT A    D  V  +S      YPF      E   L+  LP    G+
Sbjct: 162 RVAIVDLDVHQGNGTAAILARDDSVFTLSLHGQNNYPFE----KEQSDLDVALPD-GVGD 216

Query: 221 VVRQLVTDKWLPALHAH-QPQMIFISAGFDAHREDDMGQMALVEADYAWMTKQIMDVARQ 279
                   + L  L     PQ++   AG D H  D +G+M L  A  A   + +   AR+
Sbjct: 217 EDYLCALQQALATLQQRFAPQLLIYLAGADPHEGDRLGKMKLSLAGLAARDQAVFSYARE 276

Query: 280 HARGRIVSCLEGGYNLSALGRSVVAHLKVL 309
           H     V+ + GGY    + ++V  HL+ +
Sbjct: 277 HEIPVAVT-MAGGYGRE-IEQTVAVHLQTI 304


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.135    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 976,674
Number of extensions: 38161
Number of successful extensions: 107
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 106
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 228
Effective length of database: 1,217,395
Effective search space: 277566060
Effective search space used: 277566060
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 130 (54.7 bits)