BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0238.p
         (324 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310324|ref|YP_003774416.1| GTP-binding protein [Herbaspiri...   528   e-151

>gi|300310324|ref|YP_003774416.1| GTP-binding protein
           [Herbaspirillum seropedicae SmR1]
          Length = 320

 Score =  528 bits (1359), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 249/288 (86%), Positives = 271/288 (94%)

Query: 8   MSIQWFPGHMNAARKKAAEAMEKVDLVIEVVDARLPQASCNPMIEQIRLFRQRPCLKILN 67
           MSIQWFPGHMN+AR+KAAE+MEKVD+VIEVVDARLPQASCNPMIEQ+R  RQRPCLKILN
Sbjct: 1   MSIQWFPGHMNSARRKAAESMEKVDMVIEVVDARLPQASCNPMIEQLRNARQRPCLKILN 60

Query: 68  KSDLADPGVTQAWIAHYNSQKNVNAVALSCKKPSDVAKVPKLALALAPHRGTPLKPLRMM 127
           K+D+ADP  TQAWI +YNSQK V AVALSCKKPSDVA+VPKLA+ +APHRGT LKPLRMM
Sbjct: 61  KTDMADPVATQAWIDYYNSQKGVMAVALSCKKPSDVARVPKLAMQVAPHRGTALKPLRMM 120

Query: 128 IMGIPNVGKSTLMNALLKKRVAAVGDEPAVTKTQQRLYLGNNMVLIDTPGMLWPKIQHPS 187
           IMGIPNVGKSTLMNALLKKRVAAVGDEPAVTKTQQRLYLGNNMVL DTPGMLWPKI+HPS
Sbjct: 121 IMGIPNVGKSTLMNALLKKRVAAVGDEPAVTKTQQRLYLGNNMVLTDTPGMLWPKIEHPS 180

Query: 188 DGLMLAASHAIGSNALIEEEVATFLADELLKRYPHLLAARYGFKTEGMDGVAVVEGVAIK 247
           DGLMLAASHA+GSNALIEEEVATFLAD LL+RYP LL ARYGF TEGMDGVAVVEGVA K
Sbjct: 181 DGLMLAASHAVGSNALIEEEVATFLADLLLQRYPQLLKARYGFNTEGMDGVAVVEGVAAK 240

Query: 248 RGFRLKGGDFDFEKAAHTFLQDYRTGALGQITLETPATRAALLASYQA 295
           RGFRLKGGD+DFEKAAHTFLQDYR+GALG+I+LETP +RA LLA+Y++
Sbjct: 241 RGFRLKGGDYDFEKAAHTFLQDYRSGALGRISLETPQSRAELLATYRS 288


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.132    0.380 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 866,323
Number of extensions: 32577
Number of successful extensions: 146
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 148
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 239
Effective length of database: 1,217,395
Effective search space: 290957405
Effective search space used: 290957405
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)