BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0235.p
         (149 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310327|ref|YP_003774419.1| metal ion ABC transporter ATPas...   269   6e-74
gi|300310889|ref|YP_003774981.1| metal ion ABC transporter ATPas...    75   3e-15
gi|300311638|ref|YP_003775730.1| metal ion ABC transporter ATPas...    60   6e-11

>gi|300310327|ref|YP_003774419.1| metal ion ABC transporter ATPase
           [Herbaspirillum seropedicae SmR1]
          Length = 345

 Score =  269 bits (688), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 131/149 (87%), Positives = 137/149 (91%)

Query: 1   MEVIKVICDRVAVMEAGEVIEQGEVLDVFREPKHEVTRALIGDVIAHELPKGVLERLRAR 60
           MEVIK ICDRVAVMEAG+VIEQGEVLDVFR+P+HEVTRALIGDVIAHELPKGVL RLR R
Sbjct: 197 MEVIKQICDRVAVMEAGQVIEQGEVLDVFRQPRHEVTRALIGDVIAHELPKGVLARLRER 256

Query: 61  LANTEAGSGTDHLFRFAFTGSGVDQPHLSEAVRRFNLDFNILHGQIDEIQGQAFGSLAIL 120
           LA  +AG GTDHLFRFAFTG+ VDQPHLSEAVRRFNLDFNILHGQIDEIQGQAFGSLAIL
Sbjct: 257 LARADAGQGTDHLFRFAFTGNDVDQPHLSEAVRRFNLDFNILHGQIDEIQGQAFGSLAIL 316

Query: 121 ANGTAENITNAMDYLRAQGVVVEELNHVI 149
           ANGT +NI  AM YLR QGVVVEELNHVI
Sbjct: 317 ANGTQDNINQAMQYLREQGVVVEELNHVI 345


>gi|300310889|ref|YP_003774981.1| metal ion ABC transporter ATPase
           [Herbaspirillum seropedicae SmR1]
          Length = 336

 Score = 74.7 bits (182), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 46/140 (32%), Positives = 71/140 (50%), Gaps = 11/140 (7%)

Query: 1   MEVIKVICDRVAVMEAGEVIEQGEVLDVFREPKHEVTRALIGDVIAHELPKGVLERLRAR 60
           MEVI+ ICDRVAV++ G V EQG V+D+F  P+H VTR+L+    +H    G  E L  R
Sbjct: 202 MEVIRSICDRVAVLDGGAVAEQGRVVDIFLRPQHAVTRSLLTQ--SHAWDAG--ESLYQR 257

Query: 61  LANTEAGSGTDHLFRFAFTGSGVDQPHLSEAVRRFNLDFNILHGQIDEIQGQAFGSLAIL 120
             + +       L R  + G    QP LS+     +    I+ G +  I+   +G L + 
Sbjct: 258 RPDGK-------LVRLTYAGDIAAQPILSQLTAATSALATIVRGTVSRIKDTPYGQLLVE 310

Query: 121 ANGTAENITNAMDYLRAQGV 140
            +G A+ +   +D L+   +
Sbjct: 311 FSGDADALAQVLDRLQTSDI 330


>gi|300311638|ref|YP_003775730.1| metal ion ABC transporter ATPase
           [Herbaspirillum seropedicae SmR1]
          Length = 389

 Score = 60.5 bits (145), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 41/120 (34%), Positives = 58/120 (48%), Gaps = 7/120 (5%)

Query: 1   MEVIKVICDRVAVMEAGEVIEQGEVLDVFREPKHEVTRALIGDVIAHELPKGVLERLRAR 60
           M VI+ I DRV V+E G V E GEV  VF +P+H  TRAL+   + H LP+ + + L   
Sbjct: 238 MSVIREIADRVLVLEQGRVAELGEVWQVFGKPQHAATRALLAP-LQHGLPQELQQAL--- 293

Query: 61  LANTEAGSGT-DHLFRFAFTGSGVDQPHLSEAVRRFNLDFNILHGQIDEIQGQAFGSLAI 119
               +A +G  + + +  F G    QP L            +L   +D IQG   G L +
Sbjct: 294 --QPQAPAGRHERVLQLEFHGGDGLQPDLQRIAAVLGGRVRVLQAGVDHIQGHTHGQLVL 351


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.138    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 459,407
Number of extensions: 19544
Number of successful extensions: 112
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 111
Number of HSP's successfully gapped: 3
Length of query: 149
Length of database: 1,619,870
Length adjustment: 77
Effective length of query: 72
Effective length of database: 1,255,275
Effective search space: 90379800
Effective search space used: 90379800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 126 (53.1 bits)