BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0233.p
         (189 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309400|ref|YP_003773492.1| methylated-DNA-protein-cysteine...   228   3e-61
gi|300311007|ref|YP_003775099.1| O6-methylguanine-DNA methyltran...    89   2e-19
gi|300310182|ref|YP_003774274.1| methylated-DNA-protein-cysteine...    72   4e-14

>gi|300309400|ref|YP_003773492.1| methylated-DNA-protein-cysteine
           methyltransferase [Herbaspirillum seropedicae SmR1]
          Length = 190

 Score =  228 bits (580), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 111/186 (59%), Positives = 136/186 (73%), Gaps = 3/186 (1%)

Query: 1   MAYVYTTMNSPVGELTLVGRGERLAAILWENDKPTRVRLGEMSADPASPVLLETERQLNE 60
           M Y Y  M SP G L LV +G+ LAAILWE+D   RVRLGEM  D    VL+ETE QL E
Sbjct: 1   MEYAYKRMASPAGVLKLVAKGDHLAAILWEDDDALRVRLGEMVEDEDRAVLIETEHQLRE 60

Query: 61  YFAGKRKQFEVPLDFTGTDFQKRVWAALLTIPFGETRSYSEIAVQLGDIKAVRAVGAANG 120
           YFAG+R+ F++PL F GT+FQ++VW+ALL IP+G+TR+Y +IA QLG+ KAVRAVGAANG
Sbjct: 61  YFAGERESFDLPLHFEGTEFQRQVWSALLDIPYGQTRTYLDIARQLGNEKAVRAVGAANG 120

Query: 121 KNPISIIAPCHRVIGASGELTGFAGGLKAKELLLTLEGAHALHNKPGTAVPQKRRS---K 177
           +NPI IIAPCHRVIGA GELTGFAGGL  K+LLL +EG        G  +  +R++   +
Sbjct: 121 RNPICIIAPCHRVIGAGGELTGFAGGLHVKKLLLAIEGISTEGRDIGQVIDPRRKAQSRR 180

Query: 178 LPDPNQ 183
             DPNQ
Sbjct: 181 REDPNQ 186


>gi|300311007|ref|YP_003775099.1| O6-methylguanine-DNA
           methyltransferase [Herbaspirillum seropedicae SmR1]
          Length = 369

 Score = 89.0 bits (219), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 56/154 (36%), Positives = 82/154 (53%), Gaps = 5/154 (3%)

Query: 12  VGELTLVGRGERLAAILWENDKPTRVRLGEMSADPA--SPVLLETERQLNEYFAG---KR 66
           +G L +   G+ + A+    D    VR  +     A  +P   + ER L +  A     R
Sbjct: 212 LGALLVAATGQGICAVTLGEDADVLVRQLQDRFPQADLAPGDADFERTLAQVLAALEDPR 271

Query: 67  KQFEVPLDFTGTDFQKRVWAALLTIPFGETRSYSEIAVQLGDIKAVRAVGAANGKNPISI 126
           +   +PLD  GT FQ+RVW AL +IP G T +YSE+A +LG   AVRAV  A   N I++
Sbjct: 272 QGAALPLDVRGTAFQQRVWQALRSIPPGVTLTYSELAARLGQPAAVRAVANACANNEIAV 331

Query: 127 IAPCHRVIGASGELTGFAGGLKAKELLLTLEGAH 160
           + PCHR++   G  +G+  G++ K  LL  E A+
Sbjct: 332 LIPCHRIVRLDGSPSGYRWGIQRKAALLAREAAN 365


>gi|300310182|ref|YP_003774274.1| methylated-DNA-protein-cysteine
           S-methyltransferase [Herbaspirillum seropedicae SmR1]
          Length = 178

 Score = 71.6 bits (174), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 43/121 (35%), Positives = 63/121 (52%), Gaps = 10/121 (8%)

Query: 45  DPASPVLLETERQLNEYFAGKRKQFEVPLDFTGTDFQKRVWAALLTIPFGETRSYSEIAV 104
           D    V  +  +Q+  Y A    +F++P    G+ FQ+RVW A++ IP G+  +Y ++A 
Sbjct: 57  DATDAVAAQAVQQITHYLADPAYRFDLPRLSVGSAFQQRVWQAIMAIPCGQVLTYGQVAK 116

Query: 105 QLGDIKAVRAVGAANGKNPISIIAPCHRVIGASGELTGFAG-------GLKAKELLLTLE 157
           ++    A RAVG A G N   ++ PCHRV  A G L GF+         L+ K  LL  E
Sbjct: 117 RIQ--SAPRAVGQACGANWYPLVIPCHRVTAAGG-LGGFSHHDAEDGFHLEVKRWLLRHE 173

Query: 158 G 158
           G
Sbjct: 174 G 174


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.135    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 654,496
Number of extensions: 27664
Number of successful extensions: 76
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 75
Number of HSP's successfully gapped: 3
Length of query: 189
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 109
Effective length of database: 1,241,070
Effective search space: 135276630
Effective search space used: 135276630
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 128 (53.9 bits)