BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0232.p (550 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310329|ref|YP_003774421.1| chaperonin GroEL [Herbaspirillu... 967 0.0 gi|300313723|ref|YP_003777815.1| chaperonin GroEL [Herbaspirillu... 800 0.0 >gi|300310329|ref|YP_003774421.1| chaperonin GroEL [Herbaspirillum seropedicae SmR1] Length = 549 Score = 967 bits (2499), Expect = 0.0, Method: Compositional matrix adjust. Identities = 486/530 (91%), Positives = 511/530 (96%) Query: 1 MAAKQVIFGDDARAKIVNGVNILANAVKVTLGPKGRNVVLERSFGAPTVTKDGVSVAKEI 60 MAAKQVIFGD+ARAK+VNGVNILANAVKVTLGPKGRNVVLERSFGAPTVTKDGVSVAKEI Sbjct: 1 MAAKQVIFGDEARAKVVNGVNILANAVKVTLGPKGRNVVLERSFGAPTVTKDGVSVAKEI 60 Query: 61 ELKDKLENMGAQLVKEVASKTSDNAGDGTTTATVLAQAIVREGFKYVAAGFNPTDLKRGI 120 ELKDKLENMGAQLVKEVASKTSDNAGDGTTTATVLAQAIVREGFKYVAAGFNPTDLKRGI Sbjct: 61 ELKDKLENMGAQLVKEVASKTSDNAGDGTTTATVLAQAIVREGFKYVAAGFNPTDLKRGI 120 Query: 121 DKAVVAIVSEIKTLSKPTTTSKEIAQVGSISANSDSDIGDIIAKAMDKVGKEGVITVEDG 180 DKAV AIV E+K L+KPTTTSKEIAQVGSISANSD+DIGDIIAKAM+KVGKEGVITVEDG Sbjct: 121 DKAVTAIVGEVKNLAKPTTTSKEIAQVGSISANSDADIGDIIAKAMEKVGKEGVITVEDG 180 Query: 181 KSLENELDIVEGMQFDRGYLSPYFINNQEKQVVALENPFVLLFDKKVSNIRDLLPILEQV 240 KSLENELDIVEGMQFDRGYLSPYFINNQEKQ+VAL+NPF+LLFDKK+SNIRDLLP+LEQV Sbjct: 181 KSLENELDIVEGMQFDRGYLSPYFINNQEKQIVALDNPFILLFDKKISNIRDLLPVLEQV 240 Query: 241 AKAGRPLLIIAEDVEGEALATLVVNNIRGILKTAAVKAPGFGDRRKAMLEDIAILTGGQV 300 AKAGRPLLI+AEDVEGEALATLVVNNIRGILKTAAVKAPGFGDRRKAMLEDIAILTGGQV Sbjct: 241 AKAGRPLLIVAEDVEGEALATLVVNNIRGILKTAAVKAPGFGDRRKAMLEDIAILTGGQV 300 Query: 301 IAEEVGLTLEKATLAELGQAKRIEISKENTTIIDGNGEAIAIESRVKQIRAQIEEATSDY 360 IAEEVGLTLEKATLAELGQAKR+EI KENTTIIDGNGEA IE+RV IR QI EATSDY Sbjct: 301 IAEEVGLTLEKATLAELGQAKRVEIGKENTTIIDGNGEAAGIEARVAMIRTQIGEATSDY 360 Query: 361 DREKLQERVAKLAGGVALIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVPGGGVAFL 420 DREKLQERVAKLAGGVALIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVPGGGVA L Sbjct: 361 DREKLQERVAKLAGGVALIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVPGGGVALL 420 Query: 421 RARANIKDLKGDNPDQEAGIKIVLRAIEEPLRQIVFNAGDEPSVVVNAVLAGQGNYGYNA 480 RARAN+KDLKGDNPDQEAGIKIVLRAIEEPLRQIVFNAGDEPSVVVN VL G GN+GYNA Sbjct: 421 RARANVKDLKGDNPDQEAGIKIVLRAIEEPLRQIVFNAGDEPSVVVNKVLEGSGNFGYNA 480 Query: 481 ADGTYGDMIALGILDPTKVTRSALQNAASVAALILTTEAMIAEQPEDKSA 530 ++GTYGD++ LG+LDP KVTRSALQNAASVA+LILTT+A++AE EDK A Sbjct: 481 SNGTYGDLVELGVLDPAKVTRSALQNAASVASLILTTDALVAEVAEDKPA 530 >gi|300313723|ref|YP_003777815.1| chaperonin GroEL [Herbaspirillum seropedicae SmR1] Length = 540 Score = 800 bits (2067), Expect = 0.0, Method: Compositional matrix adjust. Identities = 393/521 (75%), Positives = 464/521 (89%) Query: 1 MAAKQVIFGDDARAKIVNGVNILANAVKVTLGPKGRNVVLERSFGAPTVTKDGVSVAKEI 60 M+AKQV F D ARA+IV GVN+LA+AVKVTLGPKGRNV+L+RSFGAP +TKDGVSVAKEI Sbjct: 1 MSAKQVKFHDTARARIVKGVNVLADAVKVTLGPKGRNVLLDRSFGAPVITKDGVSVAKEI 60 Query: 61 ELKDKLENMGAQLVKEVASKTSDNAGDGTTTATVLAQAIVREGFKYVAAGFNPTDLKRGI 120 ELKD+LENMGAQ+VK+VASKT+D AGDGTTTATVLAQ+IV+EG KYVAAG NP DLKRGI Sbjct: 61 ELKDRLENMGAQVVKQVASKTADVAGDGTTTATVLAQSIVQEGMKYVAAGMNPMDLKRGI 120 Query: 121 DKAVVAIVSEIKTLSKPTTTSKEIAQVGSISANSDSDIGDIIAKAMDKVGKEGVITVEDG 180 DKAV A + E++ +S+P TT+KEIAQVG+ISANSD IG+IIA+AMDKVGKEGVITVEDG Sbjct: 121 DKAVTAAIDELRKISRPITTNKEIAQVGAISANSDEAIGNIIAQAMDKVGKEGVITVEDG 180 Query: 181 KSLENELDIVEGMQFDRGYLSPYFINNQEKQVVALENPFVLLFDKKVSNIRDLLPILEQV 240 KSLENELD+VEGMQFDRGYLSPYFIN+ +KQ+ L++P VLL+DKK+S+IR+LLP+LE Sbjct: 181 KSLENELDVVEGMQFDRGYLSPYFINDPDKQLCQLDDPLVLLYDKKISSIRELLPVLEMT 240 Query: 241 AKAGRPLLIIAEDVEGEALATLVVNNIRGILKTAAVKAPGFGDRRKAMLEDIAILTGGQV 300 AKAG+PL I+AED++GEALATLVVN++RG+LK AAVKAPGFGDRRKAMLED+A+LTGG V Sbjct: 241 AKAGKPLFIVAEDIDGEALATLVVNSVRGVLKVAAVKAPGFGDRRKAMLEDLAVLTGGTV 300 Query: 301 IAEEVGLTLEKATLAELGQAKRIEISKENTTIIDGNGEAIAIESRVKQIRAQIEEATSDY 360 I+EE G +LEK L +LG AKR+E+ K++TT+IDG G I++RVK I+AQIEE TSDY Sbjct: 301 ISEETGKSLEKTALEDLGSAKRVEVRKDSTTVIDGAGAQDKIDARVKAIQAQIEETTSDY 360 Query: 361 DREKLQERVAKLAGGVALIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVPGGGVAFL 420 DREKLQERVAKLAGGVA+IK+GAATEVEMKEKK RV+DALHATRAAVEEG+VPGGGVA L Sbjct: 361 DREKLQERVAKLAGGVAVIKIGAATEVEMKEKKDRVDDALHATRAAVEEGIVPGGGVALL 420 Query: 421 RARANIKDLKGDNPDQEAGIKIVLRAIEEPLRQIVFNAGDEPSVVVNAVLAGQGNYGYNA 480 RARA I L+G N DQ AGI+IVLRA+E PLR I NAGDEPSVVV V +G+GN+GYNA Sbjct: 421 RARAAISKLEGANADQNAGIQIVLRALEAPLRVIAANAGDEPSVVVAKVYSGKGNFGYNA 480 Query: 481 ADGTYGDMIALGILDPTKVTRSALQNAASVAALILTTEAMI 521 A+G YGDM+ LG++DPTKVTR+ALQNAASVA+LILTT+A + Sbjct: 481 ANGEYGDMVELGVVDPTKVTRTALQNAASVASLILTTDATV 521 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.313 0.132 0.352 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,466,400 Number of extensions: 59353 Number of successful extensions: 232 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 232 Number of HSP's successfully gapped: 2 Length of query: 550 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 460 Effective length of database: 1,193,720 Effective search space: 549111200 Effective search space used: 549111200 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 133 (55.8 bits)