BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0227.p (230 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300314040|ref|YP_003778132.1| transcription regulator protein... 132 3e-32 gi|300311599|ref|YP_003775691.1| transcription regulator protein... 69 4e-13 gi|300313741|ref|YP_003777833.1| GntR family transcription regul... 62 4e-11 gi|300312737|ref|YP_003776829.1| transcription regulator protein... 62 6e-11 gi|300310738|ref|YP_003774830.1| transcription regulator protein... 57 9e-10 >gi|300314040|ref|YP_003778132.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 234 Score = 132 bits (331), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 86/226 (38%), Positives = 125/226 (55%), Gaps = 9/226 (3%) Query: 5 IDQNTLYIEKVYDRLLEAITSGDLKPGERVRQSALADRLGVSRQPISHALQLLRYQGLVR 64 ID IE+VY +L+AI +G L P E++ Q LA++LGVSRQPI A Q+L+ +G + Sbjct: 4 IDAPAQLIEQVYHAILDAICTGALAPNEKITQEGLAEQLGVSRQPILQAFQILKREGFIE 63 Query: 65 DAGKQGVEVSPVNPDYIVHLYHARVSLESSAAAMAAQRVKDGLAPKDDID-ALKETIELG 123 DAG++GV V+ ++P ++ LY R L+ AA A++ K A + + A + IE G Sbjct: 64 DAGRKGVMVTALDPQRLMQLYQVRAVLDGLAARSTAEQWKSDAALRAAGERAGRALIEAG 123 Query: 124 VSAMRHNAPLSVLVKADFRFHMAIYRLSGNPAIEQIMAGQWPHLMRSMMAVLNDPGVPVR 183 A+ LS + AD FH IYR GNP I Q A W H+ R+M A+L+ VR Sbjct: 124 -RALADMRDLSARILADMDFHQFIYRSCGNPMIGQTTALHWQHIRRAMGAILSS---EVR 179 Query: 184 A----WEEHQIIATHIFAGVVDEAFQAAARHIERAGRDLAKRLSAG 225 + WEEH+ I + G A + A +H E A LA+ L++ Sbjct: 180 SHLAVWEEHEAILQAMLEGRPALADKLARQHAESAAAHLARVLTSA 225 >gi|300311599|ref|YP_003775691.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 243 Score = 68.6 bits (166), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 56/213 (26%), Positives = 98/213 (46%), Gaps = 7/213 (3%) Query: 13 EKVYDRLLEAITSGDLKPGERVRQSALADRLGVSRQPISHALQLLRYQGLVRDAGKQGVE 72 E V+ ++ AI G++ PG ++ + LA G+SR P+ A+ L Q L+ G Sbjct: 19 EHVFRKIQSAIVQGEIAPGSKISEPELARTYGISRGPLREAIHRLEGQNLLVRVPHVGAR 78 Query: 73 VSPVNPDYIVHLYHARVSLESSAAAMAAQRVKDGLAPKDDIDALKETIELGVSAMRHNAP 132 V + + +V L+ R SLE A +AAQR+ + ++D L+ ++ A Sbjct: 79 VVSLTLEGLVELFQIRESLEGMACRLAAQRMS-----RAELDELRRVLDTHEKDEAFQAG 133 Query: 133 LSVLVK-ADFRFHMAIYRLSGNPAIEQIMAGQWPHLMRSM-MAVLNDPGVPVRAWEEHQI 190 + D+ FH I + SGN + +I+ G+ L R + P P +A+ EH Sbjct: 134 RGYYQQEGDYDFHYKIIQASGNQILTRILCGELYQLARMYRIQYSATPHRPRQAFAEHHR 193 Query: 191 IATHIFAGVVDEAFQAAARHIERAGRDLAKRLS 223 I + G + A RHI + R++ +++ Sbjct: 194 ILDALADGDGELADLLMRRHIGASRRNIEHQIA 226 >gi|300313741|ref|YP_003777833.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 222 Score = 62.0 bits (149), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 51/175 (29%), Positives = 85/175 (48%), Gaps = 19/175 (10%) Query: 13 EKVYDRLLEAITSGDLKPGERVRQSALADRLGVSRQPISHALQLLRYQGLVRDAGKQGVE 72 EKVY+ L + + G KPG ++++ LA LGVSR P+ AL+ L GL QG+ Sbjct: 6 EKVYEVLRQRLVGGQYKPGTQLKEEPLARELGVSRTPVRTALRRLVEDGLATADAGQGIH 65 Query: 73 VSPVNPDYIVHLYHARVSLESSAAAMAAQRVKDGLAPKDDIDALKETIELGVSAMRHNAP 132 V+ + I + R+ LE AA++AA+R + + + L+E+ E A++ Sbjct: 66 VAAWSDWDIEETFQLRMLLEPYAASLAAERGDEKM-----LALLRESNEKMAQAIKSGGL 120 Query: 133 LSV--LVKADFRFHMAIYRLSGNPAIEQIMAGQWPHLMRSMMAVLNDPGVPVRAW 185 SV + A+ FH I S +P + R+M+ + D + VR++ Sbjct: 121 HSVEKIQAANSIFHRTILEYSASPRL------------RAMLETIIDMPIIVRSF 163 >gi|300312737|ref|YP_003776829.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 234 Score = 61.6 bits (148), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 44/159 (27%), Positives = 79/159 (49%), Gaps = 6/159 (3%) Query: 7 QNTLYIEKVYDRLLEAITSGDLKPGERVRQSALADRLGVSRQPISHALQLLRYQGLVRDA 66 Q+ E+VY L E I +G ++PG+++ LAD LG S P+ A++ L +G + Sbjct: 16 QHATLSERVYQDLCELIQAGQVRPGQKLTLKGLADALGTSPMPVREAVRQLAAEGALEIL 75 Query: 67 GKQGVEVSPVNPDYIVHLYHARVSLESSAAAMAAQRVKD-GLAPKDDIDALKETIELGVS 125 + + V + L R++LE A AA+ + GL + + L +T+ + + Sbjct: 76 PNRAMRVPLMTKGKFRELLKIRLALEGLAIEHAARHIDAVGL---EQVARLHDTLSVEMK 132 Query: 126 AMRHNAPLSVLVKADFRFHMAIYRLSGNPAIEQIMAGQW 164 R N L +++ + + H A Y+ SG P + ++AG W Sbjct: 133 RKRPNVDL--VIRLNKQLHFAAYQGSGMPTLVDLIAGLW 169 >gi|300310738|ref|YP_003774830.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 234 Score = 57.4 bits (137), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 31/83 (37%), Positives = 50/83 (60%) Query: 13 EKVYDRLLEAITSGDLKPGERVRQSALADRLGVSRQPISHALQLLRYQGLVRDAGKQGVE 72 E+VY RL + I S L PG+ ++ +A R GVSR P+ AL L+ +G + ++G + Sbjct: 11 EQVYHRLKDDIFSFRLLPGDNFTETEMAQRQGVSRTPLRDALFRLQREGYLEVGFRRGWK 70 Query: 73 VSPVNPDYIVHLYHARVSLESSA 95 V P++ D + +LY R+ LE +A Sbjct: 71 VCPIDFDRLDNLYDLRIVLEMAA 93 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.133 0.382 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 737,689 Number of extensions: 30836 Number of successful extensions: 161 Number of sequences better than 1.0e-08: 11 Number of HSP's gapped: 159 Number of HSP's successfully gapped: 11 Length of query: 230 Length of database: 1,619,870 Length adjustment: 82 Effective length of query: 148 Effective length of database: 1,231,600 Effective search space: 182276800 Effective search space used: 182276800 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)