BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0223.p
         (192 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313079|ref|YP_003777171.1| transcription regulator protein...    67   7e-13
gi|300311331|ref|YP_003775423.1| transcription regulator protein...    59   2e-10

>gi|300313079|ref|YP_003777171.1| transcription regulator protein
           [Herbaspirillum seropedicae SmR1]
          Length = 201

 Score = 67.4 bits (163), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 52/190 (27%), Positives = 91/190 (47%), Gaps = 5/190 (2%)

Query: 5   NTRDQIFDAALKLLLERGFNASSVQDITVEAGVPKGSFYNHFESKEALAAEIVSDY-ASR 63
           N R+ I  A   L+ ++G+++  + +I   A +PKGSFY++F SKE    E++  Y A  
Sbjct: 8   NKRN-ILMAGRALIAQKGYSSVGLSEILAAAAIPKGSFYHYFGSKEQYGRELIEHYVAGY 66

Query: 64  RSTLREILAD--DRLPALERLRGYFTALNQRLVDRGFQHGCMIGNMTAELSEQSPVIREQ 121
             +L  +L D      A ERL  Y+    +    +  +  C++  ++AE+++ S  +R+ 
Sbjct: 67  LESLERVLGDPAHGASARERLLTYWGYWLESQCCQELEQRCLVVKLSAEVADLSEDMRQA 126

Query: 122 LLRIYGNWSTALEYAITAGQQDGSIPNQLSAKTLAGFLLNAWEGATLRVRVERSPDAFDQ 181
           L +    +   +   I  G  +GS+   L     A  L   W GA+L  R+ R     + 
Sbjct: 127 LHQGTQAFIERIAACIAQGIAEGSLHTVLHPLATATMLYQQWLGASLLSRLSRDRAPMEA 186

Query: 182 FMEVVFNKVL 191
            M +V  +VL
Sbjct: 187 AM-LVTRRVL 195


>gi|300311331|ref|YP_003775423.1| transcription regulator protein
           [Herbaspirillum seropedicae SmR1]
          Length = 223

 Score = 59.3 bits (142), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 46/184 (25%), Positives = 76/184 (41%), Gaps = 1/184 (0%)

Query: 8   DQIFDAALKLLLERGFNASSVQDITVEAGVPKGSFYNHFESKEALAAEIVSDYASRRSTL 67
           DQ  D A+++  ERG+  +S+ D++    + +GS Y  F  K++L    +  Y ++RS  
Sbjct: 40  DQALDGAVRVFSERGYAGASISDLSEAMQLAQGSLYKAFRDKQSLFLAALERYRTQRSEK 99

Query: 68  REILADDRLPALERLRGYFTALNQRLVDRGFQHGCMIGNMTAELSEQSPVIREQLLRIYG 127
                D      ERLR       +       + GC++ +    ++   P +  Q+     
Sbjct: 100 LRRAIDAGATGRERLRNMLLFYAESAQGAAGRQGCLVVSSAVAITGFEPSVATQIASTLA 159

Query: 128 NWSTALEYAITAGQQDGSIPNQLSAKTLAGFLLNAWEGATLRVRVERSPDAFDQFMEVVF 187
                L   I  GQQDGS+       + A  LL   +G  +  +  RS       +EV  
Sbjct: 160 RNEALLGELIRQGQQDGSVAAHADPPSTARLLLCLTQGMRVVGKAGRSRKEMLALVEVAL 219

Query: 188 NKVL 191
            KVL
Sbjct: 220 -KVL 222


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.133    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 559,596
Number of extensions: 21144
Number of successful extensions: 81
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 81
Number of HSP's successfully gapped: 2
Length of query: 192
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 112
Effective length of database: 1,241,070
Effective search space: 138999840
Effective search space used: 138999840
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)