BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0220.p (155 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300314057|ref|YP_003778149.1| methyl-accepting chemotaxis pro... 70 8e-14 gi|300312038|ref|YP_003776130.1| methyl-accepting chemotaxis tra... 67 6e-13 gi|300311614|ref|YP_003775706.1| methyl-accepting chemotaxis tra... 64 4e-12 gi|300310583|ref|YP_003774675.1| methyl-accepting chemotaxis I (... 64 5e-12 gi|300313024|ref|YP_003777116.1| methyl-accepting chemotaxis pro... 64 6e-12 >gi|300314057|ref|YP_003778149.1| methyl-accepting chemotaxis protein I [Herbaspirillum seropedicae SmR1] Length = 554 Score = 70.1 bits (170), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 61/209 (29%), Positives = 94/209 (44%), Gaps = 58/209 (27%) Query: 1 MDNFSAAMRNNASHTQQAGNLVDNASTHAGEGGKVVGSVVATMGAIRASSHKVADIIGVI 60 M+ +A ++ N +H +QA L NAS A +GG +V +VV TM AI SS K+ DIIGVI Sbjct: 319 MEQLTATVKQNDNHARQANQLAHNASEIARQGGAIVDNVVDTMAAINVSSRKIVDIIGVI 378 Query: 61 XPVRTRSPTSSACGAMSGIET-----AIGSVATIMRDIATAG------------------ 97 + ++ + A+ VAT +R++A Sbjct: 379 DGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRNLAQRSAAAAKEVKQLIDDSVQNV 438 Query: 98 ---------AGQTED------------IGEVT--------------RAVGDIDQMTQQNA 122 AGQT + +GE++ +A+ +DQ+TQ NA Sbjct: 439 ENGTHLVEQAGQTMEQIVASVQQVTDVMGEISSASHEQSLGIEEVHKAIALMDQVTQHNA 498 Query: 123 ALIEQAATAAESLRHEAEKLVEQVGAFKL 151 AL+EQA+ A +L+ +A L + VG F+L Sbjct: 499 ALVEQASAAVATLQEQAVNLNQAVGVFQL 527 >gi|300312038|ref|YP_003776130.1| methyl-accepting chemotaxis transmembrane I protein [Herbaspirillum seropedicae SmR1] Length = 579 Score = 67.0 bits (162), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 72/212 (33%), Positives = 103/212 (48%), Gaps = 58/212 (27%) Query: 1 MDNFSAAMRNNASHTQQAGNLVDNASTHAGEGGKVVGSVVATMGAIRASSHKVADIIGVI 60 M+ ++ ++ NA + +QA L +AS A +GG VV VV TMG+I ASS K+ADIIGVI Sbjct: 306 MEELTSTVKQNADNARQANQLAVSASEVASQGGAVVNQVVDTMGSINASSRKIADIIGVI 365 Query: 61 XPV------------------------------RTRSPTSSACGAMSGIETAI-GSVAT- 88 + RS + GA I+ I GSVA Sbjct: 366 DGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAGAAKEIKELIEGSVAQV 425 Query: 89 --------------------------IMRDIATAGAGQTEDIGEVTRAVGDIDQMTQQNA 122 I+ +I++A Q+E I +V A+ +D++TQQNA Sbjct: 426 DMGSKLVERAGITMSEVVQSVRRVTDIVGEISSASQEQSEGIEQVNLAIAQMDEVTQQNA 485 Query: 123 ALIEQAATAAESLRHEAEKLVEQVGAFKLAQR 154 AL+E+AA AA+SL+ +AE L + VG FKL Q+ Sbjct: 486 ALVEEAAAAAQSLQEQAETLTQTVGFFKLEQQ 517 >gi|300311614|ref|YP_003775706.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 581 Score = 64.3 bits (155), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 67/211 (31%), Positives = 101/211 (47%), Gaps = 58/211 (27%) Query: 1 MDNFSAAMRNNASHTQQAGNLVDNASTHAGEGGKVVGSVVATMGAIRASSHKVADIIGVI 60 M+ ++ +R NA + +QA + +AS A +GG++VG VV TM I SS K+ DIIGVI Sbjct: 308 MEEMTSTVRQNADNARQANQMAVSASEIALQGGQIVGRVVHTMDEINQSSRKIVDIIGVI 367 Query: 61 --------------------------------XPVRTRSPTSSA------------CGAM 76 VR+ + S+A G + Sbjct: 368 DGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSAAAAKEIKALIADSVGKV 427 Query: 77 SG-----------IETAIGSVAT---IMRDIATAGAGQTEDIGEVTRAVGDIDQMTQQNA 122 G +E + SV + I+ +I+ A A Q+ I E+ RAV +D+ TQQNA Sbjct: 428 EGGSALVAQAGATMEQVVSSVRSVTDIVAEISAASAEQSSGIEEINRAVTQMDEGTQQNA 487 Query: 123 ALIEQAATAAESLRHEAEKLVEQVGAFKLAQ 153 AL+EQAA AA+S++ +A +L + + FKL Q Sbjct: 488 ALVEQAAAAAKSMQEQAVRLTQSISIFKLEQ 518 >gi|300310583|ref|YP_003774675.1| methyl-accepting chemotaxis I (serine chemoreceptor) transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 574 Score = 63.9 bits (154), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 31/60 (51%), Positives = 45/60 (75%) Query: 1 MDNFSAAMRNNASHTQQAGNLVDNASTHAGEGGKVVGSVVATMGAIRASSHKVADIIGVI 60 M+ ++ ++ NA + +QA LV +AS +A +GG+VVG VVATMG+I+ SS K+ DIIGVI Sbjct: 304 MEQLTSTVQQNAENARQANQLVVSASDYATKGGRVVGDVVATMGSIKESSSKIVDIIGVI 363 >gi|300313024|ref|YP_003777116.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 571 Score = 63.9 bits (154), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 69/209 (33%), Positives = 98/209 (46%), Gaps = 58/209 (27%) Query: 1 MDNFSAAMRNNASHTQQAGNLVDNASTHAGEGGKVVGSVVATMGAIRASSHKVADIIGVI 60 M+ ++ +R N+ + +QA L NAS A GG VVG VVATM AI SS K+ DIIGVI Sbjct: 306 MEELTSTVRQNSDNARQANQLAVNASEVAQAGGTVVGKVVATMSAINDSSRKIVDIIGVI 365 Query: 61 --------------------------------XPVRTRSPTSSACG-------------- 74 VRT + S+A Sbjct: 366 DGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSAAAAHEIKALIDDSVAKV 425 Query: 75 ------------AMSGIETAIGSVATIMRDIATAGAGQTEDIGEVTRAVGDIDQMTQQNA 122 M+ + ++ V+ I+ +I AGA QT+ I ++ AV +D+ TQQNA Sbjct: 426 DTGSKLVDEAGQTMNEVVASVKRVSDIVAEITAAGAEQTQGIEQINNAVVQMDENTQQNA 485 Query: 123 ALIEQAATAAESLRHEAEKLVEQVGAFKL 151 AL+EQAA AA++L+ +A +L E V F+L Sbjct: 486 ALVEQAAAAAKALQEQAGRLSETVSVFRL 514 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.311 0.123 0.327 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 404,151 Number of extensions: 14246 Number of successful extensions: 249 Number of sequences better than 1.0e-08: 57 Number of HSP's gapped: 232 Number of HSP's successfully gapped: 100 Length of query: 155 Length of database: 1,619,870 Length adjustment: 78 Effective length of query: 77 Effective length of database: 1,250,540 Effective search space: 96291580 Effective search space used: 96291580 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 126 (53.1 bits)