BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0217.p
         (318 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313025|ref|YP_003777117.1| chemotaxis signal transduction ...   457   e-130
gi|300311277|ref|YP_003775369.1| chemotaxis signal transduction ...   440   e-125

>gi|300313025|ref|YP_003777117.1| chemotaxis signal transduction
           protein [Herbaspirillum seropedicae SmR1]
          Length = 320

 Score =  457 bits (1177), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 226/318 (71%), Positives = 265/318 (83%), Gaps = 2/318 (0%)

Query: 1   MDAFQKEIDERTNLTSSNKFELLLFRLGSANG--DGPGELFGINVFKIREIVPMVPITTA 58
           MD+FQKEIDERTNLTS+NKFELLLFRLG+ +G  D PGEL+GINVFKIREIVPM+ IT A
Sbjct: 1   MDSFQKEIDERTNLTSTNKFELLLFRLGTPDGSTDKPGELYGINVFKIREIVPMMDITAA 60

Query: 59  AGTKAPMLGMVNIRGQVISVIDLPAVTGCKPKTGLNILLITEYARNTQAFAVESVEEIVR 118
           AG ++PM+GMVNIRGQV+SV+DLPAV GCK   G NILLITE+AR+TQAFAVESVEEIVR
Sbjct: 61  AGMRSPMMGMVNIRGQVMSVVDLPAVAGCKAGHGNNILLITEFARHTQAFAVESVEEIVR 120

Query: 119 LDWSQVLSAEASAGGDLVTSIARLDSDLDGSRLVQVLDVEQILNMTSPVKQALDSGRNGE 178
           LDWSQVL A++ + G LVTSIARLDS++DG RLVQVLDVE ILN+ SPVK+ +     G 
Sbjct: 121 LDWSQVLPADSHSPGSLVTSIARLDSEVDGGRLVQVLDVEHILNLVSPVKEQMQPAPPGA 180

Query: 179 LKDLVKPGAIVLAADDSKVARALIEDGLTTLGVPFIMTKSGKEAWEKLQVLGAEAQREGK 238
            +  +KPGA+VLAADDS++ARALIE  L  L +PFIM   G +AW+KLQ L   A +EGK
Sbjct: 181 AELKLKPGAVVLAADDSRMARALIEQCLKDLNLPFIMETDGLQAWKKLQQLSQAAAQEGK 240

Query: 239 QIADKVALMLTDLEMPEMDGFTLTRNIKADQRYKGIPVVIHSSLSGSANEDHVRSVGANG 298
            + DKVA++LTDLEMPEMDGFTLTR IKA  +YK +PVVIHSSL+GSANEDHVRSVGANG
Sbjct: 241 PLTDKVAMVLTDLEMPEMDGFTLTRKIKASDQYKQLPVVIHSSLTGSANEDHVRSVGANG 300

Query: 299 YVAKFAIDELAAALKKTL 316
           YVAKF+  ELAA L++ L
Sbjct: 301 YVAKFSPPELAAMLRQVL 318


>gi|300311277|ref|YP_003775369.1| chemotaxis signal transduction
           protein [Herbaspirillum seropedicae SmR1]
          Length = 324

 Score =  440 bits (1131), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 220/322 (68%), Positives = 256/322 (79%), Gaps = 11/322 (3%)

Query: 1   MDAFQKEIDERTNLTSSNKFELLLFRLGSANGDGPGELFGINVFKIREIVPMVPITTAAG 60
           MD FQKEIDERTNLT+SNKFELLLFRLG+       ELFGINVFKIREIVPM P+T AAG
Sbjct: 1   MDNFQKEIDERTNLTASNKFELLLFRLGTDPHGERSELFGINVFKIREIVPMPPVTKAAG 60

Query: 61  TKAPMLGMVNIRGQVISVIDLPAVTGCKPKTGLNILLITEYARNTQAFAVESVEEIVRLD 120
           T++PMLGMVNIRGQ+ISVIDLPAV GC PKTGLNILL+TEYAR+TQAFAVESV+EIVRL+
Sbjct: 61  TQSPMLGMVNIRGQIISVIDLPAVVGCVPKTGLNILLVTEYARSTQAFAVESVDEIVRLE 120

Query: 121 WSQVLSAEASAGGDLVTSIARLDSDLDGSRLVQVLDVEQILNMTSPVKQAL------DSG 174
           WSQVLSAE S+GG  VTSIARLD+D D SRL QVLDVEQIL+   P  + L       S 
Sbjct: 121 WSQVLSAETSSGGAFVTSIARLDADKDTSRLAQVLDVEQILHEIMPTDRDLKMESLEKSA 180

Query: 175 RNGELKDLVKPGAIVLAADDSKVARALIEDGLTTLGVPFIMTKSGKEAWEKLQVLGAEAQ 234
            +G     ++PG + +AADDSKVAR+LIE GL  + +P+ M  +GKEAWEK+Q L  EA+
Sbjct: 181 SHG-----IRPGTVAIAADDSKVARSLIEQGLRAMEIPYEMHVTGKEAWEKIQKLAREAR 235

Query: 235 REGKQIADKVALMLTDLEMPEMDGFTLTRNIKADQRYKGIPVVIHSSLSGSANEDHVRSV 294
            EG+ I+DK++ +LTDLEMPEMDGFTLTRNIK +   K IPV+IHSSLSGSANEDHVRSV
Sbjct: 236 AEGRPISDKISFVLTDLEMPEMDGFTLTRNIKREDYLKSIPVIIHSSLSGSANEDHVRSV 295

Query: 295 GANGYVAKFAIDELAAALKKTL 316
           G + YVAKF  +ELAA +   L
Sbjct: 296 GGDAYVAKFEANELAATIYGVL 317


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.133    0.366 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 933,876
Number of extensions: 38222
Number of successful extensions: 186
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 189
Number of HSP's successfully gapped: 2
Length of query: 318
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 233
Effective length of database: 1,217,395
Effective search space: 283653035
Effective search space used: 283653035
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 130 (54.7 bits)