BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0209.p
         (302 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313084|ref|YP_003777176.1| hypothetical protein Hsero_3790...   507   e-145
gi|300313643|ref|YP_003777735.1| hypothetical protein Hsero_4359...   124   8e-30

>gi|300313084|ref|YP_003777176.1| hypothetical protein Hsero_3790
           [Herbaspirillum seropedicae SmR1]
          Length = 304

 Score =  507 bits (1305), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 251/303 (82%), Positives = 274/303 (90%), Gaps = 1/303 (0%)

Query: 1   MNDEELVRRIHRELADSYDEELELEIEDRTIEQLAGGVDAV-SEQDKADRRLYFRELFRL 59
           M+ EELV+R+HRELADSYDEE+ELE+EDRTI+ + G   +   E++K  RRLYFRELFRL
Sbjct: 2   MDKEELVKRVHRELADSYDEEMELELEDRTIDPVTGEFSSAHGEEEKEYRRLYFRELFRL 61

Query: 60  QAELVKLQDWVVATGHKVVILFEGRDAAGKGGVIKRITQRLNPRVCRVAALPAPNDRERT 119
           Q ELVKLQDWVV TGHKVVI+FEGRDAAGKGGVIKRITQRLNPRV RVAALPAPNDRERT
Sbjct: 62  QGELVKLQDWVVQTGHKVVIVFEGRDAAGKGGVIKRITQRLNPRVARVAALPAPNDRERT 121

Query: 120 QWYFQRYISHLPAAGEIVLFDRSWYNRAGVERVMGFCSDDQYEEFFRSAPEFERMLVRSG 179
           QWYFQRY+SHLPAAGEIVLFDRSWYNRAGVERVMGFCSD+QYEEFFRS PEFERML R+G
Sbjct: 122 QWYFQRYVSHLPAAGEIVLFDRSWYNRAGVERVMGFCSDEQYEEFFRSVPEFERMLTRAG 181

Query: 180 IQLVKYWFSITDEEQHMRFLSRIHDPLKQWKLSPMDLESRRRWEDYTKAKEIMLERTHIA 239
           IQ++KYWFSITDEEQH+RFLSRIHDPLKQWKLSPMDLESRRRWE+YTKAKE+MLERTHI 
Sbjct: 182 IQVIKYWFSITDEEQHLRFLSRIHDPLKQWKLSPMDLESRRRWEEYTKAKEVMLERTHIP 241

Query: 240 EAPWWVVQAVDKKKARLNCIHHLLNQMPYGEVEHAPISLPERERHDDYFRREVSSEILVP 299
           EAPWWVVQAVDKKKARLNCIHHLL QMPY EV H P+ LPERERH+DY R  V   ++VP
Sbjct: 242 EAPWWVVQAVDKKKARLNCIHHLLQQMPYAEVPHPPVLLPERERHEDYERHPVPDSMIVP 301

Query: 300 EVY 302
           E Y
Sbjct: 302 EFY 304


>gi|300313643|ref|YP_003777735.1| hypothetical protein Hsero_4359
           [Herbaspirillum seropedicae SmR1]
          Length = 270

 Score =  124 bits (311), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 72/239 (30%), Positives = 117/239 (48%), Gaps = 6/239 (2%)

Query: 30  TIEQLAGGVDAVSEQDKADRRLYFRELFRLQAELVKLQDWVVATGHK--VVILFEGRDAA 87
            +++       +S  DK   R   + L    + L+ +Q  ++  GHK  V+++ +G D +
Sbjct: 16  VLKETEASTKPLSSGDKEKDRANVQRL----SGLIGVQQQMLYAGHKHKVLVVLQGMDTS 71

Query: 88  GKGGVIKRITQRLNPRVCRVAALPAPNDRERTQWYFQRYISHLPAAGEIVLFDRSWYNRA 147
           GK G +  +   +NP+  R++    P   E    Y  R  + +P AGEI +F+RS Y   
Sbjct: 72  GKDGTVNDVFAAVNPQGIRISNFKGPTAIELAHDYLWRVHAQVPVAGEIAVFNRSHYEDV 131

Query: 148 GVERVMGFCSDDQYEEFFRSAPEFERMLVRSGIQLVKYWFSITDEEQHMRFLSRIHDPLK 207
            + RV  +  D + +  +R   +FERML  +G  ++K++  I+  EQ  R  SRI DP K
Sbjct: 132 LITRVHDWIDDKECQRRYRQINDFERMLWETGTVVLKFFLHISKAEQKSRLQSRIDDPNK 191

Query: 208 QWKLSPMDLESRRRWEDYTKAKEIMLERTHIAEAPWWVVQAVDKKKARLNCIHHLLNQM 266
            WK  P DL  R+ W+ Y    + +L  T    APW+VV A  K    L   + +L  +
Sbjct: 192 HWKFDPQDLAERKFWDAYQTRYQEVLRATSTLHAPWYVVPADSKTHRNLVVANVVLETL 250


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.137    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 955,935
Number of extensions: 39225
Number of successful extensions: 106
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 105
Number of HSP's successfully gapped: 2
Length of query: 302
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 217
Effective length of database: 1,217,395
Effective search space: 264174715
Effective search space used: 264174715
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)