BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0208.p
         (206 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313083|ref|YP_003777175.1| hypothetical protein Hsero_3789...   181   4e-47

>gi|300313083|ref|YP_003777175.1| hypothetical protein Hsero_3789
           [Herbaspirillum seropedicae SmR1]
          Length = 196

 Score =  181 bits (459), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 99/192 (51%), Positives = 125/192 (65%), Gaps = 15/192 (7%)

Query: 25  AAIITEVHILTTTRSKRWNGNIDTLKAPYLAGVITQMGIYGERVQFALVTSGNGPRYQLT 84
           A  I  V IL+++++KRW+GN++ +KA +L GVITQM  YG+RV F++  S   P Y++ 
Sbjct: 9   ACFIGRV-ILSSSKTKRWHGNVEAIKAEFLNGVITQMTSYGDRVHFSMFGSVQKPHYEVI 67

Query: 85  NTAGKKMAFDGNHHLHHPEDGEFAPGNATGVFTLDQV-RLAKAGGSKTTRT--------- 134
           N+  KKMAFDGNHHLH  E+ EF PGN T +FTLDQ+ R+   GGS T  T         
Sbjct: 68  NSFDKKMAFDGNHHLHRAEESEFGPGNVTPIFTLDQIKRIVATGGSGTRSTPRSARAASA 127

Query: 135 LSTGGVKRATTRAPSAATRAKDQVDSDKYEYFKANRATLPDTIGEHSEEITTLMRGGMPA 194
            S GG  R TT A  A       VDS+KY YFKANR  LPD I +HS+EI+ LM  GM A
Sbjct: 128 RSAGGTARPTTAAARARE----AVDSEKYAYFKANRHMLPDEINQHSDEISKLMLNGMSA 183

Query: 195 EQAFGEIVKKYF 206
           EQAFGE++ KYF
Sbjct: 184 EQAFGEVISKYF 195


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.132    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 633,936
Number of extensions: 24249
Number of successful extensions: 72
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 71
Number of HSP's successfully gapped: 1
Length of query: 206
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 125
Effective length of database: 1,236,335
Effective search space: 154541875
Effective search space used: 154541875
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 128 (53.9 bits)