BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0207.p
         (129 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310618|ref|YP_003774710.1| hypothetical protein Hsero_1286...   168   2e-43
gi|300309650|ref|YP_003773742.1| hypothetical protein Hsero_0308...    61   3e-11

>gi|300310618|ref|YP_003774710.1| hypothetical protein Hsero_1286
           [Herbaspirillum seropedicae SmR1]
          Length = 166

 Score =  168 bits (425), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 82/123 (66%), Positives = 99/123 (80%)

Query: 7   AGIVKVVSGNVQVLRREQPSLAHVGDRVFSGDRLLTAEGAAVGITLRDDTLLSLGPKSNF 66
           A IVKV+ G VQ  R  +     VG+R++ GDR+LTA  ++VG TLRDDTL+SLGP S F
Sbjct: 44  AAIVKVMRGEVQAQREGKTRPLAVGERLYEGDRVLTAAASSVGFTLRDDTLISLGPNSQF 103

Query: 67  LLEQYNFDASSGEGNVAVRVVKGTLRYVTGLIGKHAPERQQVATPTATIGIRGTDFIVDV 126
           LLEQ+ F+  + EGN+AVR+VKGTLRYV+GLIGKHAPERQQ +TPTATIGIRGTDFIV+V
Sbjct: 104 LLEQFVFNEKTDEGNIAVRMVKGTLRYVSGLIGKHAPERQQFSTPTATIGIRGTDFIVEV 163

Query: 127 ADE 129
           A E
Sbjct: 164 AGE 166


>gi|300309650|ref|YP_003773742.1| hypothetical protein Hsero_0308
           [Herbaspirillum seropedicae SmR1]
          Length = 254

 Score = 60.8 bits (146), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 37/94 (39%), Positives = 50/94 (53%), Gaps = 1/94 (1%)

Query: 30  VGDRVFSGDRLLTAEGAAVGITLRDDTLLSLGPKSNFLLEQYNFDASSGEGN-VAVRVVK 88
           V   +  GD L+T       +   D+  + L P +   + +Y +D    E + VA+ +VK
Sbjct: 63  VKSAILQGDTLITERETYTRVKFVDNAEIVLRPGTEVAVNKYIYDEKKPENDSVAIGLVK 122

Query: 89  GTLRYVTGLIGKHAPERQQVATPTATIGIRGTDF 122
           G LR VTGL+GK   E     TPTATIGIRGT F
Sbjct: 123 GGLRAVTGLVGKRNHEAVNFDTPTATIGIRGTHF 156


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.137    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 420,788
Number of extensions: 16489
Number of successful extensions: 45
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 44
Number of HSP's successfully gapped: 2
Length of query: 129
Length of database: 1,619,870
Length adjustment: 75
Effective length of query: 54
Effective length of database: 1,264,745
Effective search space: 68296230
Effective search space used: 68296230
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 125 (52.8 bits)