BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0206.p
         (203 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310619|ref|YP_003774711.1| OmpA protein [Herbaspirillum se...   261   4e-71
gi|300313671|ref|YP_003777763.1| OmpA family protein [Herbaspiri...    61   5e-11
gi|300312990|ref|YP_003777082.1| signal peptide protein [Herbasp...    59   3e-10

>gi|300310619|ref|YP_003774711.1| OmpA protein [Herbaspirillum
           seropedicae SmR1]
          Length = 190

 Score =  261 bits (666), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 128/189 (67%), Positives = 154/189 (81%)

Query: 15  ATLALLLAACAGPKERFVLLPQPDGSSSSIVVKSGGSETALATPYASVETQAGKAGKTLT 74
           A LA+LLA CAGP+ERF+LLPQPDGS+SSIVVK+   ETALATPYASVET  GK  KTLT
Sbjct: 2   AALAVLLAGCAGPRERFLLLPQPDGSASSIVVKTATGETALATPYASVETAGGKVDKTLT 61

Query: 75  LSEADVSKRYAPVMENLPLRPRTYVLQFELGRDRLTPASRKFLDQAIDEFKQFPAGEFLV 134
           ++ ADV KRYA V+ +LP RPR+Y L FELG DRLTPAS+  L +AI E K FPAGEF++
Sbjct: 62  VAPADVEKRYADVLGSLPARPRSYDLLFELGTDRLTPASQDALKKAIAEIKDFPAGEFVL 121

Query: 135 IGHADNIGNDAFNDTLSVRRAKLVETELIRAKVNLISIEVIGKGSREPRFPARKGVPEPR 194
            GHADNIG++  ND LS+RRA+L+E EL RA V  +SIEVIGKG+R+PR P ++GV EPR
Sbjct: 122 TGHADNIGSETNNDALSLRRARLIERELRRADVKALSIEVIGKGARDPRVPQKRGVAEPR 181

Query: 195 NRYVEIKLR 203
           NR+VEIK+R
Sbjct: 182 NRFVEIKIR 190


>gi|300313671|ref|YP_003777763.1| OmpA family protein
           [Herbaspirillum seropedicae SmR1]
          Length = 241

 Score = 61.2 bits (147), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 35/101 (34%), Positives = 47/101 (46%)

Query: 100 LQFELGRDRLTPASRKFLDQAIDEFKQFPAGEFLVIGHADNIGNDAFNDTLSVRRAKLVE 159
           + F+ GR  + P  R  LD+      + PA    ++GH DN G+DA ND LS++RA    
Sbjct: 110 ISFDTGRADIKPEMRPVLDRFAATLVENPATTVTIVGHTDNTGSDAINDPLSLQRASRTR 169

Query: 160 TELIRAKVNLISIEVIGKGSREPRFPARKGVPEPRNRYVEI 200
             L    V      + G+GS EP           RNR VEI
Sbjct: 170 DYLSSRGVAANRFSIQGRGSHEPLVANTSDANRARNRRVEI 210


>gi|300312990|ref|YP_003777082.1| signal peptide protein
           [Herbaspirillum seropedicae SmR1]
          Length = 203

 Score = 58.5 bits (140), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 51/101 (50%)

Query: 102 FELGRDRLTPASRKFLDQAIDEFKQFPAGEFLVIGHADNIGNDAFNDTLSVRRAKLVETE 161
           F+  +  L PA +  LD+ +   K       + +GH D+IG+ A+N  LSVRRA+ V+  
Sbjct: 98  FDFDKATLKPAGKAKLDELVGNLKAINLEVIIAVGHTDSIGSVAYNQKLSVRRAESVKAY 157

Query: 162 LIRAKVNLISIEVIGKGSREPRFPARKGVPEPRNRYVEIKL 202
           L+   V    +   GKG  +P    +      +NR VEI++
Sbjct: 158 LVSKGVEANRVYTEGKGKSQPVADNKTAAGRAKNRRVEIEV 198


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.135    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 512,569
Number of extensions: 18802
Number of successful extensions: 45
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 45
Number of HSP's successfully gapped: 3
Length of query: 203
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 122
Effective length of database: 1,236,335
Effective search space: 150832870
Effective search space used: 150832870
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 128 (53.9 bits)