BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0204.p
         (234 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313733|ref|YP_003777825.1| metal-dependent hydrolase [Herb...   196   1e-51
gi|300313739|ref|YP_003777831.1| amidohydrolase 2 [Herbaspirillu...   157   6e-40
gi|300313878|ref|YP_003777970.1| metal-dependent transmembrane h...    67   1e-12

>gi|300313733|ref|YP_003777825.1| metal-dependent hydrolase
           [Herbaspirillum seropedicae SmR1]
          Length = 309

 Score =  196 bits (498), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 109/267 (40%), Positives = 140/267 (52%), Gaps = 43/267 (16%)

Query: 10  ACDCHIHIYDYTRFALMPA-APSTPPQSLWSDYQREQQALGLTRAVIVQPTGYGFDNRCT 68
           ACD H HIYD  RF + P      P  +  +DY+     LG+ R V+VQP+ YG DNRC 
Sbjct: 43  ACDSHHHIYD-ARFPVSPHWRGGRPDGATVADYRLLMAKLGIARHVVVQPSTYGSDNRCL 101

Query: 69  LDALEQAQGSARAIVAV-----------------------------------------XA 87
           LDAL Q    AR IV +                                           
Sbjct: 102 LDALTQFGAQARGIVVIDDDVDLPQLKEMDRLGVRGVRVNFLSAQSWGVTTVERLRRTAE 161

Query: 88  KIAPLGWNINLQIDGRDVEQYEDVLKSLPCRVVIDHNGKFLKPVTPDHPAMQSLLRLLDT 147
           +IAPLGW++ + + G  + Q+E VL +LP +VVIDH G+  +P   DHP  Q++LRLL  
Sbjct: 162 RIAPLGWHVQVLMSGAQIAQHEAVLAALPTQVVIDHLGRIPQPDGLDHPGAQAVLRLLAK 221

Query: 148 GRCWIKLSAPYETSQTGAPHYEDVSALARTFAHKFPERCLWASNWPHPGRNPQPSNRALF 207
           G  WIKLS PY  +  G P Y D S LA+ +    P+R LW S+WPHP    +P +  LF
Sbjct: 222 GNTWIKLSEPYADTLQGPPDYPDTSLLAKAYLQAAPQRTLWGSDWPHPTEKIKPDDAVLF 281

Query: 208 DLLPAWAPSAEVRTRILVDNPAALYGF 234
           DLL AWAP   +R +ILV NPAAL+GF
Sbjct: 282 DLLAAWAPDPALRQQILVSNPAALFGF 308


>gi|300313739|ref|YP_003777831.1| amidohydrolase 2 [Herbaspirillum
           seropedicae SmR1]
          Length = 315

 Score =  157 bits (398), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 92/270 (34%), Positives = 128/270 (47%), Gaps = 39/270 (14%)

Query: 3   SSTIPDGACDCHIHIYDYTRFALMPAAPSTPPQSLWSDYQREQQALGLTRAVIVQPTGYG 62
           +S +PD ACDCH+HIYD  RFA  P A      +  + Y++ QQ LG TR V+V P+ YG
Sbjct: 47  ASRLPDDACDCHMHIYD-PRFAWAPGAKLVHAPATVAMYRQLQQRLGTTRNVVVTPSAYG 105

Query: 63  FDNRCTLDALEQAQGSARAIVAV------------------------------------- 85
            DN CTLDAL Q   SAR +  V                                     
Sbjct: 106 VDNSCTLDALAQLGRSARGVAVVNDQVSDAELQRLHQAGVRGLRFNLAVGSVTTVEMMEP 165

Query: 86  -XAKIAPLGWNINLQIDGRDVEQYEDVLKSLPCRVVIDHNGKFLKPVTPDHPAMQSLLRL 144
              ++APLGW++   +    +  +  +L  LP  +V DH  +        HP    +  L
Sbjct: 166 LARRMAPLGWHLQANMPNEVLLAHRAMLARLPVPLVFDHFARIPLQADATHPVFDFVTGL 225

Query: 145 LDTGRCWIKLSAPYETSQTGAPHYEDVSALARTFAHKFPERCLWASNWPHPGRNPQPSNR 204
           +   R  +KLS  Y  S+ GAP Y+DV+ LAR      P + +W S+WPHP    +P + 
Sbjct: 226 MRERRASVKLSGAYLYSKRGAPDYDDVAPLARALVQLAPTQLVWGSDWPHPTEQHKPDDA 285

Query: 205 ALFDLLPAWAPSAEVRTRILVDNPAALYGF 234
            L D++ +W  S E+   +LV NPA LY F
Sbjct: 286 RLLDVMISWLGSEEMVRTVLVANPARLYQF 315


>gi|300313878|ref|YP_003777970.1| metal-dependent transmembrane
           hydrolase [Herbaspirillum seropedicae SmR1]
          Length = 278

 Score = 67.0 bits (162), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 71/279 (25%), Positives = 104/279 (37%), Gaps = 70/279 (25%)

Query: 11  CDCHIHIY-------DYTRFALMPAAPSTPPQSLWSDYQREQQALGLTRAVIVQPTGYGF 63
            D H H++       D  R+A  P    T  Q     Y       G++  V+VQP+  G 
Sbjct: 14  IDTHAHVFTRDLPLADVRRYA--PTYDVTVEQ-----YIARLDTHGMSHGVLVQPSFLGS 66

Query: 64  DNRCTLDALEQAQGSARAIVAV-------------------------------------- 85
           DNR  L AL +     R I  V                                      
Sbjct: 67  DNRYLLAALARYPQRLRGIAMVDADVSEQQLLALQAGGVVGIRFNLVGGAPVPDFTGVWR 126

Query: 86  --XAKIAPLGWNINLQIDGRDVEQYEDVLKSLPCRVVIDHNGKFLKPVTPDHPAMQSLLR 143
              A+IA LGW + +  +  D+ +    L ++  +VV+DH G+    +  D P  + LL 
Sbjct: 127 STLARIAQLGWQVEIHREAVDLPRVLPPLLAMGLKVVVDHFGRVDAALGVDDPGFRYLLS 186

Query: 144 LLDTGRCWIKLSAPYET--SQTGAPHYEDVSALARTFAHKFPERCLWASNWPHPGRNPQP 201
               G+ W+KLSA Y    ++ G         L R   H   +R LW S+WPH       
Sbjct: 187 SAAGGQVWVKLSASYRNGGAEQGQRFARQAWPLLRE--HFGAQRLLWGSDWPH------T 238

Query: 202 SNRALFDLLPAWAP-----SAEVRTRILVDNPAA-LYGF 234
            + +L D   +W       S E + RI+    AA L+G 
Sbjct: 239 QHESLTDYGHSWQQFTQLVSDEEQRRIITGQTAAQLFGI 277


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.135    0.438 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 800,365
Number of extensions: 33182
Number of successful extensions: 86
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 83
Number of HSP's successfully gapped: 4
Length of query: 234
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 152
Effective length of database: 1,231,600
Effective search space: 187203200
Effective search space used: 187203200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)