BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0201.p
         (375 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313082|ref|YP_003777174.1| phosphoesterase [Herbaspirillum...   278   4e-76

>gi|300313082|ref|YP_003777174.1| phosphoesterase [Herbaspirillum
           seropedicae SmR1]
          Length = 448

 Score =  278 bits (712), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 164/280 (58%), Positives = 195/280 (69%), Gaps = 14/280 (5%)

Query: 73  LSVMGALHALIGWRLLPALGVDAAWQGVGVLLLVLSFVLIPAGLLARGIKQQPL----SD 128
           L ++ ALH  IGW+LLPAL   A W  +G ++L LSF+L+P  L+A  +K+Q L    SD
Sbjct: 75  LGLLAALHVWIGWQLLPALSTQAGWITLGGVVLALSFLLMPIALVAPYLKRQGLPEVWSD 134

Query: 129 RLAWIGMLVMGLFSSLLLLTLVREAVLLALPLLHAVTP----EIIESSARAVIGCALLLT 184
           RL+W GML MG FSS LL TL+R   L  L     ++P    E+IE +A   +    + T
Sbjct: 135 RLSWAGMLAMGAFSSALLATLLRAIALALL-PWLPLSPIQRHEMIELTAWLALALTAVAT 193

Query: 185 LVGYMNARRLAEVVNVDVPIADLPQALQGFTIVQISDIHVGPTIKKRYLRAIVDKVNELK 244
           ++GY+NARR A VV V VPIA+LP AL+GF+IVQISDIHVGPTIK  YL+AIVDKVN L 
Sbjct: 194 VIGYLNARRTAAVVEVSVPIANLPAALEGFSIVQISDIHVGPTIKAPYLQAIVDKVNALS 253

Query: 245 ADLVAITGDLVDGSVQQLSEHTAPLGQLRARHGAYFVTGNHEYYSNAPAWIAEVRRLGLT 304
            D+VAITGDLVDGSV+QL+ HTAPL QLRARHGAYFVTGNHEYYSNA  WI EVRRLGLT
Sbjct: 254 PDVVAITGDLVDGSVRQLAPHTAPLAQLRARHGAYFVTGNHEYYSNAHEWIEEVRRLGLT 313

Query: 305 VLLNEHVVLDHGGAIXAAAGAGGGDRFHRASFRREPAQRS 344
           VL+NEHVVL H  A    AG       H      +PA RS
Sbjct: 314 VLMNEHVVLRHDDAGLVLAGVTDYTAHH-----FDPAHRS 348


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.325    0.140    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 960,262
Number of extensions: 35258
Number of successful extensions: 170
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 168
Number of HSP's successfully gapped: 1
Length of query: 375
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 288
Effective length of database: 1,207,925
Effective search space: 347882400
Effective search space used: 347882400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 131 (55.1 bits)