BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0199.p
         (112 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313080|ref|YP_003777172.1| major facilitator superfamily p...   107   2e-25

>gi|300313080|ref|YP_003777172.1| major facilitator superfamily
           permease [Herbaspirillum seropedicae SmR1]
          Length = 403

 Score =  107 bits (267), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 66/99 (66%), Positives = 77/99 (77%), Gaps = 5/99 (5%)

Query: 8   DARAPVLRQDS-----HRWKILGIGVLANASFSAAFAGIPVTAIFMRADYRLDNTQLGLA 62
            A APVL + S     HRWK+L  GV ANASFSA F+GIPVT++ +R+DYRL NTQLGLA
Sbjct: 2   QAAAPVLPRPSPSPSPHRWKVLAAGVAANASFSAVFSGIPVTSVVLRSDYRLSNTQLGLA 61

Query: 63  LGSLGLGVAVSELPWGVLTDRWGDRRVLLCGLISTALAL 101
           LG L LGVA+ ELPWGVLTDRWGDR+VLL GL+  + AL
Sbjct: 62  LGLLSLGVALGELPWGVLTDRWGDRKVLLAGLLGASAAL 100


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.325    0.138    0.429 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 289,161
Number of extensions: 9095
Number of successful extensions: 63
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 63
Number of HSP's successfully gapped: 1
Length of query: 112
Length of database: 1,619,870
Length adjustment: 73
Effective length of query: 39
Effective length of database: 1,274,215
Effective search space: 49694385
Effective search space used: 49694385
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 124 (52.4 bits)