BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0198.p
         (197 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313080|ref|YP_003777172.1| major facilitator superfamily p...   193   7e-51

>gi|300313080|ref|YP_003777172.1| major facilitator superfamily
           permease [Herbaspirillum seropedicae SmR1]
          Length = 403

 Score =  193 bits (491), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 108/190 (56%), Positives = 128/190 (67%), Gaps = 17/190 (8%)

Query: 6   VWRVAMAIGILCFPQVSVLTFATIFLHDVGHAGLGLISATMAAIQIGAAVMRVWSGRWTD 65
           VWR+A+ IG+LC PQV++L+F  IFL +   A +  IS  +  +Q+GAA  R+ SGRWTD
Sbjct: 230 VWRLALGIGLLCAPQVALLSFGGIFLQESAQASVLAISVLLTLVQLGAAAARIASGRWTD 289

Query: 66  RHGNRRRYLRACSALSVALYIALGTVAALAPAVWPQWTLAAIALLLVAGGVCASAWHGVA 125
           R G RR YLR C+  S AL+   G +  LAP             LLVA GV  SAWHGVA
Sbjct: 290 RRGQRRDYLRGCALASAALF---GLLGVLAP-------------LLVAAGVVVSAWHGVA 333

Query: 126 YTELATLAGPRQVGTALGLGNTCVFLVFFLAAQAVPALLAWQSWPAVWLAGAAGALIAWP 185
           YTELA +AG  QVGTALGLGN+CVFLVFFLAAQA+P LL WQ WPAVWLA A  AL+ WP
Sbjct: 334 YTELAVVAGAGQVGTALGLGNSCVFLVFFLAAQAIPPLLHWQGWPAVWLAIAVVALLVWP 393

Query: 186 IFLKPLHRNR 195
           +F  P  R R
Sbjct: 394 LF-PPEDRAR 402


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.328    0.137    0.461 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 543,071
Number of extensions: 19361
Number of successful extensions: 143
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 142
Number of HSP's successfully gapped: 1
Length of query: 197
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 117
Effective length of database: 1,241,070
Effective search space: 145205190
Effective search space used: 145205190
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 128 (53.9 bits)