BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0196.p
         (342 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313078|ref|YP_003777170.1| NADP-dependent oxidoreductase [...   457   e-130
gi|300311093|ref|YP_003775185.1| NADPH:quinone oxidoreductase [H...    69   7e-13

>gi|300313078|ref|YP_003777170.1| NADP-dependent oxidoreductase
           [Herbaspirillum seropedicae SmR1]
          Length = 343

 Score =  457 bits (1177), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 238/341 (69%), Positives = 277/341 (81%), Gaps = 5/341 (1%)

Query: 2   PQSATINRRIVLASRPTAVPAAEHFRLEETAVPTPGPGQFLLRADYLSLDPYMRGRMSDA 61
           PQ+   NRRIVLASRPT  P A++FRLEE AVP    GQ LLR  +LSLDPYMRGRMSDA
Sbjct: 6   PQT---NRRIVLASRPTGAPTADNFRLEEVAVPALEEGQLLLRGQWLSLDPYMRGRMSDA 62

Query: 62  PSYAAHVEIDAVMTGGTVSRVVASQHPDYQEGDLVMAYTGWQDYALSDGTGATKLDKDMP 121
           PSYA  VEI  VMTGG VSRV AS+HP+++EGDLVMAYTGWQ+YA+SDGTG  KL     
Sbjct: 63  PSYAPPVEIGGVMTGGVVSRVEASRHPEFKEGDLVMAYTGWQEYAVSDGTGVNKLPAGFA 122

Query: 122 RPSYALGLFGMPGFTAYAGLLDIGQPKEGETVVVAAATGAVGSVVGQIAKLKGCRVVGIA 181
            PS+ALG+ GMPG+TAYAGL+DIGQP+ GETVVVAAATGAVGS+VGQIAKL+GC VVGIA
Sbjct: 123 HPSHALGVLGMPGYTAYAGLIDIGQPRPGETVVVAAATGAVGSLVGQIAKLRGCHVVGIA 182

Query: 182 GGAEKCRYAVEELGFDACIDHRSEDLPQQLKDACPKGIDVYFENVGGKVFEAVLPLLNVH 241
           GGA+KC  AV+ELGFDACIDHR+ D P+QLK ACP+GIDVYFENVGG V +AV PLLN+H
Sbjct: 183 GGAQKCEAAVKELGFDACIDHRAADFPEQLKAACPRGIDVYFENVGGAVLDAVFPLLNIH 242

Query: 242 ARVPLCGLIAQYSGVAPNATLLGTLPRNLLTKRIRMQGFIIFDYY-QRAGYFAEFFKDMS 300
           ARVP+CGLIA Y+G    AT    + R  LT+R+R+QGFIIFDYY  R    A F +++ 
Sbjct: 243 ARVPVCGLIAHYNG-GTLATDSAAILRRTLTQRMRVQGFIIFDYYVNRPDLHAAFQQEVG 301

Query: 301 AWVAAGKIKYREDVVQGLENAPQAFMGLLEGKNFGKLVVQI 341
            W+  GK+ YREDVVQGLENAP+AFMGLL+GKNFGKLVV++
Sbjct: 302 NWLKQGKLHYREDVVQGLENAPEAFMGLLQGKNFGKLVVKL 342


>gi|300311093|ref|YP_003775185.1| NADPH:quinone oxidoreductase
           [Herbaspirillum seropedicae SmR1]
          Length = 325

 Score = 68.6 bits (166), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 76/261 (29%), Positives = 116/261 (44%), Gaps = 23/261 (8%)

Query: 90  YQEGDLVMAYTGWQDYALSDGTGATKLDKDMPRPS--YALGLFGMPG--FTAYAGLLDIG 145
           ++ GDLV A      YA      A  L + +P P    AL    +P   FT ++ + D G
Sbjct: 79  FKLGDLVCALVQGGGYA---EFCAAPLAQCLPVPKGLSALEAAALPENYFTVWSNVFDRG 135

Query: 146 QPKEGETVVVAAATGAVGSVVGQIAKLKGCRVVGIAGGAEKCRYAVEELGFDACIDHRSE 205
           Q    ET++V   +  +G    QIA+  G RV   AG AEKCR A EELG +  I++++E
Sbjct: 136 QLSGEETLLVQGGSSGIGVTAIQIARALGHRVFATAGSAEKCR-ACEELGAERAINYKTE 194

Query: 206 DLPQQLKDAC-PKGIDVYFENVGGKVFEAVLPLLNVHARVPLCGLIAQYSGVAPNATLLG 264
           D    +K+    +G+DV  + VGG      +  L    R+     IAQ  G      +  
Sbjct: 195 DFEAVVKELTGGRGVDVILDMVGGDYLPREIKALADDGRLV---FIAQLGGAKGQLDMGQ 251

Query: 265 TLPRNLL----TKRIRMQGFIIFDYYQRAGYFAEFFKDMSAWVAAGKIKYREDVVQGLEN 320
            + R L     T R R   F       +A   A+  + +   + AGKI+        LE 
Sbjct: 252 VMRRRLTITGSTLRPRPVAF-------KAAIAAKLREHVWPLIEAGKIRPVIHHRFPLEQ 304

Query: 321 APQAFMGLLEGKNFGKLVVQI 341
           A QA   +    + GK+++++
Sbjct: 305 AAQAHAMMEGSTHIGKIMLEL 325


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.138    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,149,097
Number of extensions: 49706
Number of successful extensions: 154
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 151
Number of HSP's successfully gapped: 2
Length of query: 342
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 256
Effective length of database: 1,212,660
Effective search space: 310440960
Effective search space used: 310440960
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)