BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0191.p
         (596 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313073|ref|YP_003777165.1| potassium-transporting ATPase s...   952   0.0  

>gi|300313073|ref|YP_003777165.1| potassium-transporting ATPase
           subunit A [Herbaspirillum seropedicae SmR1]
          Length = 593

 Score =  952 bits (2461), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 477/571 (83%), Positives = 521/571 (91%), Gaps = 1/571 (0%)

Query: 25  GWYIARVMEGKSAVNRIFGGIEHFLYRLCGIRADAGMGWKQYALALLLFNIVGLFVVYSL 84
           GWY+ARVMEGKS VNR+FGGIE   YRLCGI  +  M WKQYA+A++LFN +G   VY L
Sbjct: 24  GWYMARVMEGKSRVNRLFGGIERVFYRLCGISREHEMDWKQYAIAVVLFNFIGAIAVYLL 83

Query: 85  QRLQMWLPLNPAGMANVSADSSFNTAVSFVTNTNWQGYVGESTMSYLTQMLALSVQNFVS 144
           QRLQ WLPLNPA +A+VS DSSFNTA+SFVTNTNWQGY GESTMSYLTQM AL++QNF+S
Sbjct: 84  QRLQQWLPLNPAALASVSPDSSFNTALSFVTNTNWQGYAGESTMSYLTQMAALALQNFLS 143

Query: 145 AATGIAVAFALIRGFARHSSKSIGNFWVDMTRASLYVLLPLSVLVAVVLMSQGVIQNFKS 204
           AATGIA+AFALIRGFARHSSK IGNFWVDMTR++LYVLLPLSV++A+VL+ QG IQNF++
Sbjct: 144 AATGIAIAFALIRGFARHSSKGIGNFWVDMTRSTLYVLLPLSVVLALVLVQQGSIQNFRA 203

Query: 205 YVEVSTLETTAYTVPRLDPQGQPLKDEKGNPLVDDMKTSKQTLPMGPVASQEAIKMVGTN 264
           Y +V TLE T YTVP+LD  GQPLKD KG P+ +   T KQTLPMGPVASQEAIKM+GTN
Sbjct: 204 YQDVKTLEVTHYTVPKLDAAGQPLKDAKGEPVTEAQSTDKQTLPMGPVASQEAIKMIGTN 263

Query: 265 GGGFFNANSAHPYENPTPLSNFVQMLAILIIPAALCTSFGMLVGDRRQGWAILAAMTLLF 324
           GGGFFNANSAHPYENPTPLSNF+QMLAILIIPAALCTSFG+LVGDRRQGWAILAAMTLLF
Sbjct: 264 GGGFFNANSAHPYENPTPLSNFLQMLAILIIPAALCTSFGVLVGDRRQGWAILAAMTLLF 323

Query: 325 IVMALTVMHFEQQSNPALAAAHAAQGSGMMEGKETRFGTIASSLFAAITTAASCGAVNAM 384
           +VM L +M+ E Q NP LA+ HA+ G GMMEGKETRFG  AS+LFA+ITTAASCGAVNAM
Sbjct: 324 VVMTLVLMYAESQPNPMLASLHAS-GPGMMEGKETRFGIPASALFASITTAASCGAVNAM 382

Query: 385 HDSLSPLGGLVPMLQMQLGEVVYGGVGAGLYGMLIFAVLAVFIAGLMIGRTPEYLGKKIG 444
           HDSLSPLGGLVPMLQMQLGEVV+GGVG+GLYGMLIFAVLAVFIAGLMIGRTPEYLGKKIG
Sbjct: 383 HDSLSPLGGLVPMLQMQLGEVVFGGVGSGLYGMLIFAVLAVFIAGLMIGRTPEYLGKKIG 442

Query: 445 VFDMKMMSIAILMTPALVLVLTAISVMVESGLAGIANPGAHGFSEILYAFSSAANNNGSA 504
           VFDMKMMSIAILMTPALVL+ TA+SVMVE+GLAGIANPGAHGFSEILYAFSSAANNNGSA
Sbjct: 443 VFDMKMMSIAILMTPALVLIFTALSVMVEAGLAGIANPGAHGFSEILYAFSSAANNNGSA 502

Query: 505 FAGLSANTPYYNVMTGIAMWLGRFGIIVPVLAMAGSLAGKKRLAATSGTLPTHGPLFVAL 564
           FAGLSANTPYYN+ TGI  WLGRFGIIVPVLAMAGSLAGKKRLAATSGTLPTHGPLFVAL
Sbjct: 503 FAGLSANTPYYNITTGICTWLGRFGIIVPVLAMAGSLAGKKRLAATSGTLPTHGPLFVAL 562

Query: 565 LIGAVILVGALTYVPALALGPVIEHLQMMAI 595
           LIGAVILVGALTYVPALALGPV+EHLQMMA+
Sbjct: 563 LIGAVILVGALTYVPALALGPVVEHLQMMAM 593


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.136    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,655,645
Number of extensions: 65267
Number of successful extensions: 376
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 374
Number of HSP's successfully gapped: 1
Length of query: 596
Length of database: 1,619,870
Length adjustment: 91
Effective length of query: 505
Effective length of database: 1,188,985
Effective search space: 600437425
Effective search space used: 600437425
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 133 (55.8 bits)