BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0186.p
         (314 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313070|ref|YP_003777162.1| two component sensor histidine ...   353   1e-98

>gi|300313070|ref|YP_003777162.1| two component sensor histidine
           kinase [Herbaspirillum seropedicae SmR1]
          Length = 939

 Score =  353 bits (906), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 194/308 (62%), Positives = 229/308 (74%), Gaps = 17/308 (5%)

Query: 1   VQFARSRNAGKLVIGQSHG--RGWTRWWRKNLAARIAANGQDIDVYTVARPAESGRDDSV 58
           +QFARSRNAGKLVIGQ  G  R   RW R  LA RIA +G +ID+YT+AR     + +  
Sbjct: 350 LQFARSRNAGKLVIGQEEGGLRRLLRWPRGTLAQRIARSGGEIDLYTIARSRTRHQHEPA 409

Query: 59  RTPVEETRDDGGRLRRHRRXATTADVCAGCRRRGYLWATVSCAVTTAMAWWLIAYLHPAN 118
                 +             A  A +    R RG LWA  SCA+TT +A+ L   LHPAN
Sbjct: 410 SPDSAAS-------------AAEALLTRRRRTRGTLWAVASCAITTTLAFLLDGKLHPAN 456

Query: 119 VIMLYLVGVMIVAVRYGRSASALASVMSVLAFDFFFVAPRFSISVSDAQYLITLLVMLAV 178
           VIMLYLVGVM+VA+RYGR+ASAL SV+SVL+FDFFFV PRFSI+VSDAQYL+TL VMLAV
Sbjct: 457 VIMLYLVGVMLVAMRYGRAASALVSVLSVLSFDFFFVDPRFSITVSDAQYLLTLAVMLAV 516

Query: 179 SLFISSLASRMRHQANVAMLREARAGNLYMLGKELAAVLTLEQILEIGRRHLGAVFGAKT 238
           SLFISSLA+R+R QA+VAM REARA NLYMLGKEL+A+LTL+QILEIGRRHL AVFGA+ 
Sbjct: 517 SLFISSLAARLRRQASVAMQREARAANLYMLGKELSALLTLDQILEIGRRHLAAVFGARI 576

Query: 239 AFCLPDSGENVRVAAPEEHD--THALQDIDLGVAQWVYDNDQAAGRGTATLPAAQALYLP 296
           AF LPDS + +R+A PE+     H  +++D GVAQWVYDN QAAG+GTATLP+A ALYLP
Sbjct: 577 AFFLPDSADQLRLAEPEQDSGAAHVFRNVDAGVAQWVYDNGQAAGKGTATLPSAAALYLP 636

Query: 297 LNATMRTR 304
           L ATMRTR
Sbjct: 637 LTATMRTR 644


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.325    0.134    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 865,309
Number of extensions: 31918
Number of successful extensions: 154
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 151
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 229
Effective length of database: 1,217,395
Effective search space: 278783455
Effective search space used: 278783455
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 130 (54.7 bits)