BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0184.p
         (93 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313070|ref|YP_003777162.1| two component sensor histidine ...   112   4e-27
gi|300311514|ref|YP_003775606.1| two component sensor histidine ...    62   1e-11
gi|300310697|ref|YP_003774789.1| two component hybrid sensor his...    59   5e-11
gi|300312689|ref|YP_003776781.1| transmembrane sensor kinase tra...    58   1e-10
gi|300310677|ref|YP_003774769.1| two component transmembrane sen...    58   1e-10

>gi|300313070|ref|YP_003777162.1| two component sensor histidine
           kinase [Herbaspirillum seropedicae SmR1]
          Length = 939

 Score =  112 bits (281), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 52/82 (63%), Positives = 64/82 (78%)

Query: 11  MEISVIDRGPGFPAGMEERAFEKFTRGDTESSTPGVGLGLAICRAIVDAHGGTIRALPAE 70
           +++ V+D+G GFP  M + AFEKFTRGD ES+TPGVGLGLAICRAI++AH G I   P E
Sbjct: 858 VKVCVMDQGRGFPPTMTQHAFEKFTRGDNESATPGVGLGLAICRAIIEAHQGRIWIAPQE 917

Query: 71  GGRGARVCFTLPLDKPPALPEE 92
            G+GA VCFTLP++  PA PEE
Sbjct: 918 AGQGATVCFTLPVETQPAPPEE 939


>gi|300311514|ref|YP_003775606.1| two component sensor histidine
           kinase [Herbaspirillum seropedicae SmR1]
          Length = 473

 Score = 61.6 bits (148), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 37/80 (46%), Positives = 48/80 (60%), Gaps = 4/80 (5%)

Query: 10  LMEISVIDRGPGFPAGMEERAFEKFTRGD-TESSTPGVGLGLAICRAIVDAHGGTIRALP 68
           L+ +S++DRGPG P       FE F R   T+S++ G GLGL+I R IV+AH G I+A  
Sbjct: 387 LLHLSILDRGPGVPEEEMNSIFELFFRSSRTKSNSSGHGLGLSIARRIVEAHQGFIQAAN 446

Query: 69  AEGGRGARVCFTLPL--DKP 86
              G G RV  TLP   D+P
Sbjct: 447 RSNG-GLRVDITLPFMADEP 465


>gi|300310697|ref|YP_003774789.1| two component hybrid sensor
           histidine kinase/response regulator protein
           [Herbaspirillum seropedicae SmR1]
          Length = 916

 Score = 59.3 bits (142), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 32/82 (39%), Positives = 44/82 (53%), Gaps = 1/82 (1%)

Query: 4   AKANAGLMEISVIDRGPGFPAGMEERAFEKFTRGDTESSTPGVGLGLAICRAIVDAHGGT 63
           A A  G ++I V D G G     + R FE F R D +   PG+G+GLAI R  V   GG+
Sbjct: 595 ADAGKGALQIEVSDTGCGIAPQFQSRIFEPFERADADRRQPGIGMGLAIVRLWVQRMGGS 654

Query: 64  IRALPAEGGRGARVCFTLPLDK 85
           I  L ++ G G R+   LP ++
Sbjct: 655 I-VLESQPGMGTRMHLQLPAER 675


>gi|300312689|ref|YP_003776781.1| transmembrane sensor kinase
           transcription regulator protein [Herbaspirillum
           seropedicae SmR1]
          Length = 459

 Score = 58.2 bits (139), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 34/72 (47%), Positives = 40/72 (55%), Gaps = 1/72 (1%)

Query: 11  MEISVIDRGPGFPAGMEERAFEKFTRGDTESSTPGVGLGLAICRAIVDAHGGTIRALPAE 70
           M I+V D GPG PA + ER FE+F R +     PG GLGLAI R IV A  G+IR     
Sbjct: 385 MIITVSDNGPGIPAEVRERVFERFYR-NAAPDQPGSGLGLAIVREIVQASQGSIRLDAPA 443

Query: 71  GGRGARVCFTLP 82
            G G     +LP
Sbjct: 444 QGSGLVATVSLP 455


>gi|300310677|ref|YP_003774769.1| two component transmembrane sensor
           histidine kinase [Herbaspirillum seropedicae SmR1]
          Length = 508

 Score = 58.2 bits (139), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 33/71 (46%), Positives = 41/71 (57%), Gaps = 5/71 (7%)

Query: 13  ISVIDRGPGFPAGMEERAFEKFTRGDTESSTPGVGLGLAICRAIVDAHGGTIRALPAEGG 72
           ++V D G G  AG  ER F+ F      S   G G+GLA+C+ I+  H G I A PA+  
Sbjct: 438 LTVADEGRGIDAGHRERLFDGFF----SSKVSGNGIGLALCKNIIARHRGDIWAQPAQ-V 492

Query: 73  RGARVCFTLPL 83
           RG R CFTLPL
Sbjct: 493 RGTRFCFTLPL 503


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.139    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 365,336
Number of extensions: 15977
Number of successful extensions: 121
Number of sequences better than 1.0e-08: 8
Number of HSP's gapped: 142
Number of HSP's successfully gapped: 8
Length of query: 93
Length of database: 1,619,870
Length adjustment: 63
Effective length of query: 30
Effective length of database: 1,321,565
Effective search space: 39646950
Effective search space used: 39646950
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 123 (52.0 bits)