BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0183.p (233 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313069|ref|YP_003777161.1| two component response regulato... 372 e-104 gi|300309361|ref|YP_003773453.1| response regulator for cobalt/z... 117 7e-28 gi|300311469|ref|YP_003775561.1| oxidative stress resistance two... 116 2e-27 gi|300311799|ref|YP_003775891.1| two component heavy metal respo... 115 2e-27 gi|300312356|ref|YP_003776448.1| cobalt/zinc/cadmium resistance ... 114 6e-27 >gi|300313069|ref|YP_003777161.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 236 Score = 372 bits (955), Expect = e-104, Method: Compositional matrix adjust. Identities = 179/232 (77%), Positives = 210/232 (90%), Gaps = 3/232 (1%) Query: 1 MLDHAGNIVFVEDDAHIRKLVRGALEQEGFIVHEARTAREGMVEAGTRKPDLVIVDLGLP 60 M +HAGNIVF+EDD HIRKLVR ALEQEGF+VHEA++AREG+ EAGTRKPDL+I+DLGLP Sbjct: 1 MQEHAGNIVFIEDDPHIRKLVRSALEQEGFVVHEAKSAREGVTEAGTRKPDLIILDLGLP 60 Query: 61 DQDGKQVIADIRSWSDVPIVILSARTQEAEKVAALDAGADDYLTKPFGVPELLARIRAQL 120 D DGKQVI++IR+WS VPIVILSARTQE+EKV ALDAGADDYL KPFG+PELLAR+RAQL Sbjct: 61 DGDGKQVISEIRNWSSVPIVILSARTQESEKVEALDAGADDYLVKPFGMPELLARMRAQL 120 Query: 121 RRRSQASAA---TGRFRLGDLLIDLPARTASKGGEAVHLTQIEHRLIATLLRDAGRVITH 177 RR ++AS+A +GR+RLGD+++DLPAR+ S+ GEA+HLTQIE+RL++TLLRDAGRVITH Sbjct: 121 RRHARASSAGQSSGRYRLGDVVVDLPARSVSRHGEALHLTQIEYRLLSTLLRDAGRVITH 180 Query: 178 RTLLAAGWGPSHTEDHHYLRIYMQRLRQKLEDDPAQPKHIVTEIGVGYRIVN 229 R LL AGWGPSH ED HYLRIYMQRLRQKLE D AQP HI+TEIGVGYR+ + Sbjct: 181 RQLLVAGWGPSHAEDGHYLRIYMQRLRQKLERDAAQPVHILTEIGVGYRVAD 232 >gi|300309361|ref|YP_003773453.1| response regulator for cobalt/zinc/cadmium resistance transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 235 Score = 117 bits (294), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 71/219 (32%), Positives = 120/219 (54%), Gaps = 3/219 (1%) Query: 7 NIVFVEDDAHIRKLVRGALEQEGFIVHEARTAREGMVEAGTRKPDLVIVDLGLPDQDGKQ 66 +I+ VED+ +R L + GF+V +T +G+ A T L+I+D+ LP +G Sbjct: 2 HILLVEDEPKSGDYLRRGLTESGFVVDWVQTGVDGLHNARTLDYKLIILDVMLPGMNGWD 61 Query: 67 VIADIRSWSDVPIVILSARTQEAEKVAALDAGADDYLTKPFGVPELLARIRAQLRRRSQA 126 ++ ++R D P++ L+AR + ++V L+ GADDYL KPF ELLAR+R LRR Sbjct: 62 ILRELRRTHDTPVLFLTARDEVEDRVKGLELGADDYLVKPFAYTELLARVRTLLRR--GP 119 Query: 127 SAATGRFRLGDLLIDLPARTASKGGEAVHLTQIEHRLIATLLRDAGRVITHRTLLAAGWG 186 S D+++D+ R ++ G+ + LT E L+ L+R G V++ + + W Sbjct: 120 SREVDLIEYDDVVLDVLRRKVTRAGQRIDLTAKEFALLHMLIRRPGEVLSRPQIASQVWD 179 Query: 187 PSHTEDHHYLRIYMQRLRQKLEDDPAQPKHIVTEIGVGY 225 + D + + + ++RLR KL D+ + K + T G+GY Sbjct: 180 MNFDSDTNVVDVAVRRLRAKL-DEGFEKKLLHTVWGMGY 217 >gi|300311469|ref|YP_003775561.1| oxidative stress resistance two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 253 Score = 116 bits (290), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 71/210 (33%), Positives = 113/210 (53%), Gaps = 9/210 (4%) Query: 27 QEGFIVHEARTAREGMVEAGTR-KPDLVIVDLGLPDQDGKQVIADIRSWSD-VPIVILSA 84 ++GF V A A + M + R + DL+++DL LP +DG + +R D PI++L+A Sbjct: 39 EQGFNVVTAENA-QAMNKLWIRERYDLLVLDLMLPGEDGLAICRRLRGAGDQTPIIMLTA 97 Query: 85 RTQEAEKVAALDAGADDYLTKPFGVPELLARIRAQLRRRSQ------ASAATGRFRLGDL 138 + ++ +++ L+ GADDYL KPF EL+ARI A LRR+ S F GD Sbjct: 98 KGEDVDRIIGLEMGADDYLPKPFNPRELVARINAVLRRKGPDELPGAPSETPETFEFGDF 157 Query: 139 LIDLPARTASKGGEAVHLTQIEHRLIATLLRDAGRVITHRTLLAAGWGPSHTEDHHYLRI 198 ++DL RT K G+ + LT E ++ R+A + ++ L+ G + L + Sbjct: 158 ILDLGTRTLKKNGDTISLTTGEFSVLKVFARNARQPLSREKLMEMARGREYEVFDRSLDV 217 Query: 199 YMQRLRQKLEDDPAQPKHIVTEIGVGYRIV 228 + RLR+ +E DPA P +I T G+GY + Sbjct: 218 QISRLRKLIEPDPANPLYIQTVWGLGYVFI 247 >gi|300311799|ref|YP_003775891.1| two component heavy metal response transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 230 Score = 115 bits (289), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 73/220 (33%), Positives = 121/220 (55%), Gaps = 5/220 (2%) Query: 7 NIVFVEDDAHIRKLVRGALEQEGFIVHEARTAREGMVEAGTRKPDLVIVDLGLPDQDGKQ 66 I+ VED+ + + + L ++G V A +G A D++++D+ LP DG Sbjct: 2 KILIVEDEQKMSEYLCKGLTEQGCAVDLAANGVDGQHLAIEHDYDVIVLDVMLPGLDGFS 61 Query: 67 VIADIRSWSDVPIVILSARTQEAEKVAALDAGADDYLTKPFGVPELLARIRAQLRR-RSQ 125 V+ +R + P+++L+AR +++ L GADDYL KPF ELLAR++A RR R+Q Sbjct: 62 VLRALRKVKETPVIMLTARDSVEDRIKGLHDGADDYLIKPFSFLELLARLQALTRRGRAQ 121 Query: 126 ASAATGRFRLGDLLIDLPARTASKGGEAVHLTQIEHRLIATLLRDAGRVITHRTLLAAGW 185 A + R+GDL IDL +R A +GG + LT E L+A + R G +++ + W Sbjct: 122 EPA---QLRIGDLQIDLLSRKAFRGGLRIDLTAKEFALLAVMARRQGEILSKTAIAELVW 178 Query: 186 GPSHTEDHHYLRIYMQRLRQKLEDDPAQPKHIVTEIGVGY 225 + + + + + ++RLR K+ D P + K + T G+GY Sbjct: 179 DMNFDSNTNVVEVAIKRLRAKI-DAPFEQKLLHTVRGMGY 217 >gi|300312356|ref|YP_003776448.1| cobalt/zinc/cadmium resistance two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 223 Score = 114 bits (286), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 72/218 (33%), Positives = 114/218 (52%), Gaps = 3/218 (1%) Query: 8 IVFVEDDAHIRKLVRGALEQEGFIVHEARTAREGMVEAGTRKPDLVIVDLGLPDQDGKQV 67 I+ +EDD +R L + G+ V AR +G+ A + DLV++D+ LP DG QV Sbjct: 3 ILVIEDDPKTGDYLRKGLRESGYAVDLARNGADGLHMALEQDYDLVVLDVMLPGLDGWQV 62 Query: 68 IADIRSWSDVPIVILSARTQEAEKVAALDAGADDYLTKPFGVPELLARIRAQLRRRSQAS 127 ++ +RS D+P++ L+AR +++ L GADDYL KPF EL+ RIR LRR Sbjct: 63 MSALRSKRDLPVLFLTARDHVDDRIRGLQLGADDYLVKPFSFTELVLRIRTLLRRGVTRE 122 Query: 128 AATGRFRLGDLLIDLPARTASKGGEAVHLTQIEHRLIATLLRDAGRVITHRTLLAAGWGP 187 A + + DL +D ++ G + LT E L+ L++ G ++ + + W Sbjct: 123 AEV--YEIADLQLDHVRHKVTRQGVNIALTNKEFMLLHLLIKRQGEALSRSVIASQIWDM 180 Query: 188 SHTEDHHYLRIYMQRLRQKLEDDPAQPKHIVTEIGVGY 225 + D + + + ++RLR K+ D P K I T VGY Sbjct: 181 NFDSDTNVVDVAIKRLRAKI-DAPFDKKLIHTVRSVGY 217 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.138 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 727,970 Number of extensions: 29177 Number of successful extensions: 254 Number of sequences better than 1.0e-08: 43 Number of HSP's gapped: 229 Number of HSP's successfully gapped: 43 Length of query: 233 Length of database: 1,619,870 Length adjustment: 82 Effective length of query: 151 Effective length of database: 1,231,600 Effective search space: 185971600 Effective search space used: 185971600 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)