BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0181.p
         (270 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309429|ref|YP_003773521.1| membrane protein [Herbaspirillu...   128   6e-31

>gi|300309429|ref|YP_003773521.1| membrane protein [Herbaspirillum
           seropedicae SmR1]
          Length = 262

 Score =  128 bits (321), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 99/263 (37%), Positives = 139/263 (52%), Gaps = 19/263 (7%)

Query: 26  LPVLHVLPAAAAESVGTAAPA--SSPAFTTTANIGLYSQYVFRGLTQTNEKPAVQGGLDL 83
           +  L +  A AA  V T A A  + P    + N  + S Y +RGLTQT   PA+Q G D 
Sbjct: 1   MKKLILATAIAASFVSTVARAEDAKPDNEFSFNAAVVSDYRYRGLTQTRFDPALQVGADY 60

Query: 84  SHE-SGLYAGIWASNISWISDTTPGAS------ASLEADLYGGFKYDFNDTLSGDVGFLH 136
           +H  +GLYAG W +NI WI D    AS        +E D+YGG + D     + DVG L+
Sbjct: 61  THNPTGLYAGTWLTNIKWIKDAGAVASPPVNTKGDIEWDIYGGKRGDIGGGFTYDVGGLY 120

Query: 137 YAYPGSF--PNGFTKADTNELYLGLDAKWITLRYSYAVGNTFGSADTRGSSYVDLALTHE 194
           Y YPG+    +G   A+T ELY  +       +YS ++ N FG+A+++ S Y DL    E
Sbjct: 121 YYYPGNTLADSGAKNANTFELYGQVGYGPGYFKYSQSLTNLFGAANSKYSQYFDLGANIE 180

Query: 195 LVAGINGVAHLGHQRYTGPNSSNLSYTDWKLGLNR---DFSGYVLAAYYTGTNAKDAGYT 251
              G+    H+GHQ   G N +  SYTDWK+G+++   D +G  L   Y GT+ KD   T
Sbjct: 181 TYYGVILGLHVGHQNVRG-NPNQFSYTDWKIGVSKTFDDLAGITLGLAYVGTDLKDGVTT 239

Query: 252 VKG----KNLGRDQLVLSVSRTF 270
                  KN+G++  V S+S+TF
Sbjct: 240 TPASDGLKNVGKNGFVFSLSKTF 262


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.133    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 824,334
Number of extensions: 35628
Number of successful extensions: 93
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 88
Number of HSP's successfully gapped: 2
Length of query: 270
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 186
Effective length of database: 1,222,130
Effective search space: 227316180
Effective search space used: 227316180
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 130 (54.7 bits)