BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0180.p (235 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300313540|ref|YP_003777632.1| transcription regulator protein... 136 1e-33 gi|300313824|ref|YP_003777916.1| GntR family transcription regul... 132 3e-32 gi|300313534|ref|YP_003777626.1| GntR family transcription regul... 115 4e-27 gi|300311999|ref|YP_003776091.1| GntR family transcription regul... 65 3e-12 gi|300311599|ref|YP_003775691.1| transcription regulator protein... 60 2e-10 >gi|300313540|ref|YP_003777632.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 245 Score = 136 bits (343), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 83/208 (39%), Positives = 120/208 (57%), Gaps = 6/208 (2%) Query: 18 ASKADNSPLPAQAVSARPMAGDV-----IYERILTSIMEHRLTPGTKLVEEKLAGIFNVN 72 ASKA PA+A AR V +Y+ I +IMEHRL P TKL E+ L I++ Sbjct: 4 ASKASRPATPARA-PARERDNAVAVEERMYQDIYDAIMEHRLPPRTKLTEQTLCQIYDTA 62 Query: 73 RTRVREVLARLSHEGLITTIPNRGAFIASPTPSEARAIFSARRLIEPALLRHLCEHTRPE 132 R VR+VLARL+ EG++ NRGAFIASP+P+E R +F R ++E A+L L Sbjct: 63 RHTVRKVLARLAAEGMVDLEANRGAFIASPSPAEVRDMFELRNILEHAVLEKLGHTAGTR 122 Query: 133 HIAQLRAHVALEAQAREANDRRAIIRLSGEFHIRIADMVENPVMSKMMRELASLTCLIIV 192 IA LR V E DR IRLS +FH+ +A++ N ++ + +R+L S T L+I Sbjct: 123 QIAGLRRMVEEERDCYLNGDRPRWIRLSAQFHLALAELTGNALLVETLRKLVSRTTLMIA 182 Query: 193 LYDSPTVPACTHDEHGDIIDAIAAGKVE 220 ++P AC+ DEH +++A+ G ++ Sbjct: 183 KTEAPGHNACSFDEHETVLEALEKGDIK 210 >gi|300313824|ref|YP_003777916.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 228 Score = 132 bits (331), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 72/186 (38%), Positives = 106/186 (56%) Query: 35 PMAGDVIYERILTSIMEHRLTPGTKLVEEKLAGIFNVNRTRVREVLARLSHEGLITTIPN 94 P + D I I +I RL PG KL EE LA ++ V+RT++R L L+ + L+ IP+ Sbjct: 8 PDSSDAIASDIAANIAAQRLPPGAKLPEEALARVYQVSRTKIRAALVMLAKDKLVDLIPD 67 Query: 95 RGAFIASPTPSEARAIFSARRLIEPALLRHLCEHTRPEHIAQLRAHVALEAQAREANDRR 154 +GAF++ PT E R IF RR +E A++R PE A+L AH+ LE QA ++ + Sbjct: 68 KGAFVSKPTVEETRNIFFVRRTLESAMVREFVARATPEDYARLEAHLELERQAVSDDNMQ 127 Query: 155 AIIRLSGEFHIRIADMVENPVMSKMMRELASLTCLIIVLYDSPTVPACTHDEHGDIIDAI 214 L +FHI +A +V N V++ ++ +LA + LI +LY S AC+ +EH I A Sbjct: 128 VRSTLLSDFHILLARIVGNDVLTDILEKLAGRSALITMLYQSTRDAACSSEEHRAFIAAA 187 Query: 215 AAGKVE 220 AG E Sbjct: 188 RAGDTE 193 >gi|300313534|ref|YP_003777626.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 249 Score = 115 bits (287), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 70/187 (37%), Positives = 106/187 (56%), Gaps = 5/187 (2%) Query: 41 IYERILTSIMEHRLTPGTKLVEEKLAGIFNVNRTRVREVLARLSHEGLITTIPNRGAFIA 100 I RI +I+ +L PGT+L E++LA +F V+RT+VRE L L G++T RG F+ Sbjct: 13 IAVRITEAILAKQLAPGTRLGEQQLADLFKVSRTQVREALTHLMARGIVTVSARRGWFVI 72 Query: 101 SPTPSEARAIFSARRLIEPALLRHLCEHTRP---EHIAQLRAHVALEAQAREANDRRAII 157 PTP++AR F ARR+IE LLR RP I QLR H+A E A D A Sbjct: 73 EPTPAQAREAFEARRVIELGLLRQ--ARLRPVGDTAIGQLREHIAREEAAIAGADVGARS 130 Query: 158 RLSGEFHIRIADMVENPVMSKMMRELASLTCLIIVLYDSPTVPACTHDEHGDIIDAIAAG 217 L G+FH+ +A+ + N ++++ +R+L + T L +L+ S + EH I++A+ G Sbjct: 131 YLLGDFHVCLAECLGNSLLAETLRDLTARTTLTAMLHQSSEQAEDSCSEHVLIVEALERG 190 Query: 218 KVEXCRR 224 +E + Sbjct: 191 DLEQAEQ 197 >gi|300311999|ref|YP_003776091.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 222 Score = 65.5 bits (158), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 59/188 (31%), Positives = 84/188 (44%), Gaps = 9/188 (4%) Query: 38 GDVIYERILTSIMEHRLTPGTKLVEEKLAGIFNVNRTRVREVLARLSHEGLITTIPNRGA 97 + + E I I +L+PG L E LA F V+RT +RE L +L+ G++ P RGA Sbjct: 8 AEALRESIEELIAVSKLSPGQHLDETSLAEEFGVSRTPIREALIQLASMGIVEMRPRRGA 67 Query: 98 FIASPTPSEARAIFSARRLIEPALLRHLCEHTRP-EHIAQLRAHVALEAQAREANDRRAI 156 +A P + +F E R P EH L AH A +A AR+AND A Sbjct: 68 IVAEIGPQQLIEMFEVMAEFEAMCGRLAARRMTPAEHAELLAAHQACQA-ARDANDPDAY 126 Query: 157 IRLSGEFHIRIADMVENPVMSK----MMRELASLTCLIIVLYDSPTVPACTHDEHGDIID 212 L+ FH I N ++ + R L L + + D + DEH ++D Sbjct: 127 FYLNEAFHDHIYAGSHNGFLADQARALHRRLRPYRRLQLRVRDRLK---SSFDEHQAVVD 183 Query: 213 AIAAGKVE 220 AI +G E Sbjct: 184 AIISGDAE 191 >gi|300311599|ref|YP_003775691.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 243 Score = 60.1 bits (144), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 45/184 (24%), Positives = 87/184 (47%), Gaps = 4/184 (2%) Query: 41 IYERILTSIMEHRLTPGTKLVEEKLAGIFNVNRTRVREVLARLSHEGLITTIPNRGAFIA 100 ++ +I ++I++ + PG+K+ E +LA + ++R +RE + RL + L+ +P+ GA + Sbjct: 21 VFRKIQSAIVQGEIAPGSKISEPELARTYGISRGPLREAIHRLEGQNLLVRVPHVGARVV 80 Query: 101 SPTPSEARAIFSARRLIEPALLRHLCEHTRPEHIAQLRAHVALEAQAREANDRRAIIRLS 160 S T +F R +E R + + +LR + + R + Sbjct: 81 SLTLEGLVELFQIRESLEGMACRLAAQRMSRAELDELRRVLDTHEKDEAFQAGRGYYQQE 140 Query: 161 G--EFHIRIADMVENPVMSKMM-RELASLTCLIIVLYD-SPTVPACTHDEHGDIIDAIAA 216 G +FH +I N ++++++ EL L + + Y +P P EH I+DA+A Sbjct: 141 GDYDFHYKIIQASGNQILTRILCGELYQLARMYRIQYSATPHRPRQAFAEHHRILDALAD 200 Query: 217 GKVE 220 G E Sbjct: 201 GDGE 204 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.132 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 708,675 Number of extensions: 27374 Number of successful extensions: 140 Number of sequences better than 1.0e-08: 8 Number of HSP's gapped: 144 Number of HSP's successfully gapped: 8 Length of query: 235 Length of database: 1,619,870 Length adjustment: 82 Effective length of query: 153 Effective length of database: 1,231,600 Effective search space: 188434800 Effective search space used: 188434800 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)