BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0177.p
         (352 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309715|ref|YP_003773807.1| nitrate/sulfonate/bicarbonate A...    55   8e-09

>gi|300309715|ref|YP_003773807.1| nitrate/sulfonate/bicarbonate ABC
           transporter periplasmic protein [Herbaspirillum
           seropedicae SmR1]
          Length = 319

 Score = 55.1 bits (131), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 51/218 (23%), Positives = 92/218 (42%), Gaps = 17/218 (7%)

Query: 35  GVSQAQAQAKPKFKLAYAKCAHCMSMALVPELARN--VDIEGINFTAGSDALTALVSKSV 92
           G S A   A    +L   K AH  +++ + E+A    + ++   F  G D +  +++  +
Sbjct: 15  GFSAASHAADDVIRLGNLKFAHYGAVSYIKEIAPKCGIKVDEKVFAKGPDVMQGILAGEL 74

Query: 93  DIAQVTYLSFVSGLDKGFDLVAVSGQVNGGSEMLVGKDMALASDDWAGLKKLIADYKAQG 152
           D+      + +SG   G  +  V+G   GG+ ++ GKD  + S         + D K + 
Sbjct: 75  DVGTTASEAAISGRANGAPIYVVAGFAKGGARLVAGKDSGIKS---------VKDLKGK- 124

Query: 153 KPFRIAASRGNAQDLHMRGELALNGINPSKDVQFVNIPNPSDHAAALQRGEVELICSVEP 212
              ++  +RG   ++ +  EL  NG++ +KDV  V +   +D   AL    ++ +   EP
Sbjct: 125 ---KVGVTRGGIHEVLLDAELGQNGLS-AKDVTIVYLAF-ADLNQALLGKNIDAMMQSEP 179

Query: 213 FASQIRMTGVGKHFAFPYKQAAGRLTNLIVTRSDVIKE 250
            +SQ    G G     PY    G     +V       E
Sbjct: 180 QSSQAINKGFGVEVMKPYDTPIGEPYRTMVMTEKFYNE 217


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.130    0.365 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 996,519
Number of extensions: 39785
Number of successful extensions: 145
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 146
Number of HSP's successfully gapped: 1
Length of query: 352
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 266
Effective length of database: 1,212,660
Effective search space: 322567560
Effective search space used: 322567560
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)