BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0175.p (263 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309717|ref|YP_003773809.1| nitrate/sulfonate/bicarbonate A... 238 3e-64 gi|300311645|ref|YP_003775737.1| taurine ABC transporter ATPase ... 213 1e-56 gi|300312685|ref|YP_003776777.1| nitrate/sulfonate/bicarbonate A... 201 5e-53 gi|300310818|ref|YP_003774910.1| nitrate/sulfonate/bicarbonate A... 200 1e-52 gi|300312621|ref|YP_003776713.1| ABC transporter ATPase [Herbasp... 197 9e-52 >gi|300309717|ref|YP_003773809.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 269 Score = 238 bits (607), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 116/260 (44%), Positives = 166/260 (63%), Gaps = 2/260 (0%) Query: 4 IELNNIVKVFKDKNKGGDMLAIDNVTLSLEKKEFLCLLGPSGCGKSTLLNMIAGFEHPTS 63 I + + KVFK ++ +++A+ ++ L + +F+CLLGPSGCGKSTLLN IAGF P+S Sbjct: 10 IRIQGVHKVFKTDDR--EVVALKDINLDIPDGQFVCLLGPSGCGKSTLLNAIAGFALPSS 67 Query: 64 GSVTVAGKPITGPGADRGMVFQQANLMPWLPVWDNIAFSLKLQGKSAAERRAAAQPFIET 123 G + K ++ PG DRGMVFQ+ L PW+ V N+AF L+++G AE ++ Sbjct: 68 GQILTDDKVVSEPGPDRGMVFQEYALFPWMTVEQNVAFGLEIKGTPKAEIHQRVTQLLDK 127 Query: 124 VKLKGFENHFPAELSGGMAQRVGIARALLQNPSVILMDEPFAALDAQTKMEMQEELVTLW 183 + L F FP +LSGGM QRV IAR L + ++LMDEPF ALDA T+ +Q+EL+ +W Sbjct: 128 LGLIDFRTRFPKDLSGGMRQRVAIARVLALDSPIMLMDEPFGALDALTRRNLQDELLRIW 187 Query: 184 QRYEGTIVFVTHSVDEALVLATKVAVMTHRPGRIRDLIDIDLARPRDTTSAEFNQYKRHV 243 + TIVFVTHS++EA+ LA ++ VMT+RPG ++ + ++L R RD EFN KR + Sbjct: 188 DEFRKTIVFVTHSIEEAIYLADRIVVMTYRPGTVKRDMLVNLPRLRDPADPEFNALKREL 247 Query: 244 LSLIREESALAHADAIKIAA 263 L+ EE H +K AA Sbjct: 248 GQLVMEEQQRHHNAEMKAAA 267 >gi|300311645|ref|YP_003775737.1| taurine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 261 Score = 213 bits (543), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 104/214 (48%), Positives = 144/214 (67%), Gaps = 3/214 (1%) Query: 14 KDKNKGGDMLAIDNVTLSLEKKEFLCLLGPSGCGKSTLLNMIAGFEHPTSGSVTVAGKPI 73 +DK + + A+D V+L + F+ LG SGCGKSTLLN +AGF + G +++ G+P+ Sbjct: 14 RDKQR---VHALDRVSLDIPNGGFVVALGTSGCGKSTLLNAMAGFLPLSEGRISLDGQPV 70 Query: 74 TGPGADRGMVFQQANLMPWLPVWDNIAFSLKLQGKSAAERRAAAQPFIETVKLKGFENHF 133 +GPGA+RG+VFQ+ +L+PW V DN+A LK G S ++ R AQ + V L+ F Sbjct: 71 SGPGAERGVVFQKDSLLPWKSVQDNVALGLKFAGVSKSDSRERAQELLRLVGLQDFARAA 130 Query: 134 PAELSGGMAQRVGIARALLQNPSVILMDEPFAALDAQTKMEMQEELVTLWQRYEGTIVFV 193 P ELSGGM QRVG+ARAL NP ++LMDEPF ALD+ T+ +MQE LV++W R + F+ Sbjct: 131 PYELSGGMRQRVGLARALAPNPKILLMDEPFGALDSMTREQMQELLVSVWARTGKQVFFI 190 Query: 194 THSVDEALVLATKVAVMTHRPGRIRDLIDIDLAR 227 THS++EAL L T+V VM+ RPGRI + D R Sbjct: 191 THSIEEALFLGTEVIVMSPRPGRIVARFETDFVR 224 >gi|300312685|ref|YP_003776777.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 275 Score = 201 bits (511), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 102/255 (40%), Positives = 155/255 (60%), Gaps = 5/255 (1%) Query: 4 IELNNIVKVFKDKNKGGDMLAIDNVTLSLEKKEFLCLLGPSGCGKSTLLNMIAGFEHPTS 63 IEL N+ F + G +A+ + ++S+ + EF+ ++GP+GCGKST L++I G PT Sbjct: 22 IELRNVSCRFITAD-GRATVALRDFSMSVARGEFVAVVGPTGCGKSTTLSLITGLLKPTL 80 Query: 64 GSVTVAGKPITGPGADRGMVFQQANLMPWLPVWDNIAFSLKLQGKSAAERRAAAQPFIET 123 G V V G+P+ G G VFQ + PW V +N+A +G+ A+ A A +I Sbjct: 81 GEVRVMGQPVNGIDPRIGFVFQNDAVFPWRSVRENVAAGPLFRGQPKAQAHALADEWIRR 140 Query: 124 VKLKGFENHFPAELSGGMAQRVGIARALLQNPSVILMDEPFAALDAQTKMEMQEELVTLW 183 V L F +H+P +LSGGM +RV +A+ + +P ++LMDEPF+ALD QT+ MQ+EL+ LW Sbjct: 141 VGLDKFGDHYPHQLSGGMRKRVALAQTFINSPEILLMDEPFSALDMQTRTLMQDELLRLW 200 Query: 184 QRYEGTIVFVTHSVDEALVLATKVAVMTHRPGRIRDLIDIDLARPRDTTSAEFNQ----Y 239 + G++VFVTH ++EA+ LA KV V+T RP ++ + IDL RPR + Q Sbjct: 201 SAHSGSVVFVTHDLEEAIALADKVYVLTARPATLKSVYPIDLPRPRVMEEVRYEQRFIDI 260 Query: 240 KRHVLSLIREESALA 254 R + + +REE +A Sbjct: 261 SRRIWADLREEVHIA 275 >gi|300310818|ref|YP_003774910.1| nitrate/sulfonate/bicarbonate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 265 Score = 200 bits (508), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 112/212 (52%), Positives = 147/212 (69%), Gaps = 5/212 (2%) Query: 21 DMLAIDNVTLSLEKKEFLCLLGPSGCGKSTLLNMIAGFEHPTSGSVTVAGKPITGPGADR 80 D++A + L + EF+CLLGPSGCGKSTLLN IAGF+ SG ++V GK + GPG DR Sbjct: 20 DIMA--GIDLDIRAGEFVCLLGPSGCGKSTLLNAIAGFQD-VSGEISVDGKRVKGPGLDR 76 Query: 81 GMVFQQAN-LMPWLPVWDNIAFSLKLQGKSAAERRAAAQPFIETVKLKGFENHFPAELSG 139 G+VFQ + L PWL V +N+ + LKL+G ++AERRAAA+ ++ V LK + FPAELSG Sbjct: 77 GVVFQSSEALFPWLSVRENVEYGLKLRGVASAERRAAAERYVSLVGLKHAIDKFPAELSG 136 Query: 140 GMAQRVGIARALLQNPSVILMDEPFAALDAQTKMEMQEELVTLWQRYEGTIVFVTHSVDE 199 GM QR IAR L+ PSV+LMDEPF ALDAQT+ +Q EL +W+ TIVFVTH + E Sbjct: 137 GMRQRAQIARVLVNEPSVVLMDEPFGALDAQTREVLQSELDRIWKSTGCTIVFVTHDIWE 196 Query: 200 ALVLATKVAVMTHRP-GRIRDLIDIDLARPRD 230 A++LA +V MT P I+ + ++ L PRD Sbjct: 197 AILLADRVVTMTAGPRAHIKTIEEVHLPHPRD 228 >gi|300312621|ref|YP_003776713.1| ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 257 Score = 197 bits (500), Expect = 9e-52, Method: Compositional matrix adjust. Identities = 106/248 (42%), Positives = 154/248 (62%), Gaps = 15/248 (6%) Query: 4 IELNNIVKVFKDKNKGGDMLAIDNVTLSLEKKEFLCLLGPSGCGKSTLLNMIAGFEHPTS 63 + NN+ K F GD+ I+ T + E + L+GPSGCGKSTLL+M AG E P+S Sbjct: 3 LSFNNVAKHF------GDLHVIEEFTREIASGELVALVGPSGCGKSTLLHMAAGLEKPSS 56 Query: 64 GSVTVAGKPITGPGADRGMVFQQANLMPWLPVWDNIAFSLKLQG---KSAAERRAAAQPF 120 GSV G+ I GP +R ++FQ+ L PWL + N+A +L+ Q K AAE+ A+ + Sbjct: 57 GSVAGDGQTIRGPHPERTLMFQENALYPWLTLQQNVALALEFQSVDKKKAAEQ---ARVW 113 Query: 121 IETVKLKGFENHFPAELSGGMAQRVGIARALLQNPSVILMDEPFAALDAQTKMEMQEELV 180 +E VKLKGFE+++P ++SGGM QR +ARA + P +L+DEPF ALDA T+M +Q+ L Sbjct: 114 LENVKLKGFEHYYPHQVSGGMRQRAALARAFISQPKALLLDEPFGALDALTRMTLQDALR 173 Query: 181 TLWQRYEGTIVFVTHSVDEALVLATKVAVMTHRPGRIRDLIDIDLARPRDTTS-AEFNQY 239 L ++ T+V VTH VDEAL LA ++ V + RP ++ L + +L T +EF Sbjct: 174 DLIRQQGPTVVLVTHDVDEALFLADRIFVFSPRPAKV--LKEFNLVHHEKTHDLSEFAAI 231 Query: 240 KRHVLSLI 247 +R +L L+ Sbjct: 232 RRDILCLL 239 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.134 0.388 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 761,073 Number of extensions: 30691 Number of successful extensions: 473 Number of sequences better than 1.0e-08: 123 Number of HSP's gapped: 317 Number of HSP's successfully gapped: 132 Length of query: 263 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 180 Effective length of database: 1,226,865 Effective search space: 220835700 Effective search space used: 220835700 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)