BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0173.p
         (494 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309810|ref|YP_003773902.1| dihydroorotase [Herbaspirillum ...    73   5e-14

>gi|300309810|ref|YP_003773902.1| dihydroorotase [Herbaspirillum
           seropedicae SmR1]
          Length = 428

 Score = 73.2 bits (178), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 102/456 (22%), Positives = 182/456 (39%), Gaps = 43/456 (9%)

Query: 4   FDLVIRNGTVATASDIM--QCDVGIVGGKVVALGRNLAS--GRKEIDAAGKLVLPGGVDS 59
             L I+NG +   ++ +  Q DV +  GK+V +G+  A     K IDA G +V PG VD 
Sbjct: 1   MKLHIKNGRLIDPANGIDAQQDVYVAAGKIVGVGQAPADFVANKTIDATGLVVAPGLVDL 60

Query: 60  HCHLDQPMEEGLEMADDFRSGTISAACGGTTTVI--PFAAQAKGQSLRAAVEDYHRRAEG 117
              L +P   G E      S   +A  GG T+++  P       +     +  +  R+  
Sbjct: 61  SARLREP---GYEYKATLESEMQAAIQGGVTSLVCPPDTDPVLDEPGLVEMLKHRARSLN 117

Query: 118 KAVIDYAFHMIVSDPTEKVLKEELPQLISEGYTSFKIYMTYDDLKLNDRQIIDVLAIARR 177
           +A + Y    + +    K L E + +L   G   F            +  I D   +   
Sbjct: 118 QAHV-YPLGALTAGLKGKALTE-MAELTDAGCIGFS---------QAEEPITDTTVLLS- 165

Query: 178 EGAMVMIHAENADCIAWLTEQ--------LEDAGLTAPKYHATSRPMLVEREATHRAIAL 229
                + +A+  +   WL  Q        +  +G  A +   +  P++ E  A +    L
Sbjct: 166 ----ALQYAKTFNYTVWLRPQDPHLGRSGIAHSGPAASRLGLSGVPVMSETIALYTLFEL 221

Query: 230 SELVDVPILIVHVSGKEAIEQIRWAHGHGLRIYAETCPQYFMLTADDLDQEGYQGAKCIC 289
                  + +  +S    +E +R A   GL +  +    +  L   DLD  G+  +    
Sbjct: 222 MRATGARVHLCRMSSAAGLELVRQAKSEGLPVTCDVGVHHIHLC--DLDI-GFFDSNARM 278

Query: 290 SPPPRDKENQQHIWDGLANGLFTVFSSDHAPFRYADPKGKMPGGKEVPFRYIPNGTPGLE 349
           +PP R + +++ I   L +G      SDH P    D +  +P G+  P          L 
Sbjct: 279 TPPLRSQRDREAIRTALLDGTIDAVCSDHTPVD--DDEKLLPFGEASPGATGLELLLSLS 336

Query: 350 TRLPLLFSEGVGKGRIDLNRFVALTATDPAKMYGLYPQKGTIAIGGDADIAIWDPHKEVV 409
            +  L   E  G+G+  L++ ++      AK+ GL  + G +A+G  AD+ ++DP+    
Sbjct: 337 LKWAL---ETEGEGKEVLSKAISKVTHRAAKVAGL--KAGNLAVGSVADLCLFDPNAMWK 391

Query: 410 IANDKLHHNVDYTPYEGVAVTGWPVTTLSRGEVVYD 445
           +    L     +TP+ G  + G    T+  G + ++
Sbjct: 392 VQGAALASQGKHTPFLGYELPGVVKATIVSGHIAFE 427


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.137    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,617,909
Number of extensions: 71441
Number of successful extensions: 181
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 186
Number of HSP's successfully gapped: 1
Length of query: 494
Length of database: 1,619,870
Length adjustment: 89
Effective length of query: 405
Effective length of database: 1,198,455
Effective search space: 485374275
Effective search space used: 485374275
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 132 (55.5 bits)