BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0165.p
         (348 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310581|ref|YP_003774673.1| glycosyltransferase [Herbaspiri...   571   e-164
gi|300312063|ref|YP_003776155.1| glycosyltransferase 1 protein [...    72   9e-14

>gi|300310581|ref|YP_003774673.1| glycosyltransferase
           [Herbaspirillum seropedicae SmR1]
          Length = 349

 Score =  571 bits (1472), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 267/332 (80%), Positives = 297/332 (89%)

Query: 1   MRIAIVSDAGEPQVNGVVNTLRATQQCLRNKGNEVLMLAPRDFRTFACPTYPEIRLAYKP 60
           MRIAI+SDAGEPQVNGVVNTLR+T +CLR  G+EVL+L+PRDFRTFACPTYPEIRLAY+P
Sbjct: 1   MRIAIISDAGEPQVNGVVNTLRSTVRCLRALGHEVLLLSPRDFRTFACPTYPEIRLAYQP 60

Query: 61  YAKIAAALDAFKPDCIHISTEGPMGLAARRYCLKHKLDFTTAYHTRFPEYLSARKLLPKA 120
           YA+IA+AL++F+PDCIHI+TEGPMGLAARRYCL+ KL FTTAYHTRFPEYL+ARKLLPKA
Sbjct: 61  YARIASALESFQPDCIHIATEGPMGLAARRYCLRRKLSFTTAYHTRFPEYLAARKLLPKA 120

Query: 121 LTYRLMRWFHGPSKAIMVPTPKMKESLEKNGFRNVALWGRGVDTEHFKPATEDHACIARP 180
           LTYRL+RWFHG S+AIMVPTP MK +LE+ GF  V LWGRGVDT HF+PA EDHACI RP
Sbjct: 121 LTYRLLRWFHGRSEAIMVPTPAMKTALEEQGFNKVVLWGRGVDTTHFRPAVEDHACIDRP 180

Query: 181 LFLYVGRVAVEKNIEAFLKLDLPGSKWVIGDGPQREELEQRYPQVRFLGAKGHDELPAYY 240
           LFLYVGRVAVEKNIEAFLKLDLPG+KWV+GDGPQ EEL QRYP+VRFLGAKG DELPAYY
Sbjct: 181 LFLYVGRVAVEKNIEAFLKLDLPGTKWVVGDGPQLEELTQRYPEVRFLGAKGQDELPAYY 240

Query: 241 NCADVFVFPSRTDTFGLVLAEAMACGVPVAAYPVEGPIDVVADGFSGTLNEELDVACMDA 300
           NCADVFVFPS+TDTFGLVL EAMACGVPVAAYPVEGPIDVV +G SG L  +L  AC+ A
Sbjct: 241 NCADVFVFPSKTDTFGLVLLEAMACGVPVAAYPVEGPIDVVDNGVSGILRHDLRQACLQA 300

Query: 301 LQLSRDDVRAHALTYSWDAATQQFLQHLHYAR 332
           L L R  V AHA + SW++ATQQFLQHLH AR
Sbjct: 301 LTLDRQAVHAHARSRSWESATQQFLQHLHLAR 332


>gi|300312063|ref|YP_003776155.1| glycosyltransferase 1 protein
           [Herbaspirillum seropedicae SmR1]
          Length = 391

 Score = 71.6 bits (174), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 75/229 (32%), Positives = 105/229 (45%), Gaps = 24/229 (10%)

Query: 124 RLMRWFHGPSKAIMVPTPKMKESLEKNGF---RNVALWGRGVDTEHFKP----ATEDHAC 176
           +++RW    +  I+     +++ L   G    + VAL   GVD + F+P    A      
Sbjct: 157 KMIRWAADQAAGIITVCNALRDELIVLGADPDKVVAL-RNGVDLQLFRPLEREAVRRELE 215

Query: 177 IARPLFLYVGRVAVEKNIEAFLKL--DLPGSKWVI-GDGPQREELEQRYPQ------VRF 227
           I     L VG +A  K  +  +     LP ++ +I G GP++  LE    Q      VRF
Sbjct: 216 ITGFTLLSVGNLAPVKGHDLTIAALPRLPEARLLIAGSGPEQARLEALAAQLGVRERVRF 275

Query: 228 LGAKGHDELPAYYNCADVFVFPSRTDTFGLVLAEAMACGVPVAAYPVEGPIDVVADGFSG 287
           LGA     L  YYN AD+ V  S  + +  VL E+MACG PV A  V G  +VVA   +G
Sbjct: 276 LGALPQSALCRYYNAADMMVLASAREGWANVLLESMACGTPVVASKVWGTPEVVAHPDAG 335

Query: 288 TLNEELD-------VACMDALQLSRDDVRAHALTYSWDAATQQFLQHLH 329
            L +E         V  + A   +R   R +A  +SWDA TQ  LQ  H
Sbjct: 336 LLMQERSAAGIAAAVRALQAAAPTRAATRRYAEGFSWDATTQGQLQLFH 384


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.137    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,135,816
Number of extensions: 47652
Number of successful extensions: 122
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 123
Number of HSP's successfully gapped: 2
Length of query: 348
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 262
Effective length of database: 1,212,660
Effective search space: 317716920
Effective search space used: 317716920
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)