BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0034.0162.p (505 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300310583|ref|YP_003774675.1| methyl-accepting chemotaxis I (... 415 e-117 gi|300312038|ref|YP_003776130.1| methyl-accepting chemotaxis tra... 348 5e-97 gi|300310582|ref|YP_003774674.1| methyl-accepting chemotaxis I p... 342 3e-95 gi|300312531|ref|YP_003776623.1| methyl-accepting chemotaxis tra... 340 2e-94 gi|300313024|ref|YP_003777116.1| methyl-accepting chemotaxis pro... 339 2e-94 >gi|300310583|ref|YP_003774675.1| methyl-accepting chemotaxis I (serine chemoreceptor) transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 574 Score = 415 bits (1066), Expect = e-117, Method: Compositional matrix adjust. Identities = 248/311 (79%), Positives = 267/311 (85%), Gaps = 6/311 (1%) Query: 157 GDLTQTVEEKSHDEAGQLVHSLNTMQTKLAATVNEIKQSAAIIAVASQEIATGNADLSNR 216 GDLTQ + DEA +V++L MQT LAAT+NE+K+SAA+IAVAS EIA GN DLSNR Sbjct: 230 GDLTQDFHDHGRDEAATMVNALEAMQTNLAATLNEVKESAAVIAVASHEIARGNVDLSNR 289 Query: 217 TESQASSLEETASSMEQLTSTVKQNAENAHQANQLVMSASDYAVKGGKVVGDVVQTMGSI 276 TESQASSLEETASSMEQLTSTV+QNAENA QANQLV+SASDYA KGG+VVGDVV TMGSI Sbjct: 290 TESQASSLEETASSMEQLTSTVQQNAENARQANQLVVSASDYATKGGRVVGDVVATMGSI 349 Query: 277 KESSRKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAA 336 KESS KIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSA+AA Sbjct: 350 KESSSKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRALAQRSAAAA 409 Query: 337 KEIKTLIGDSVSKVDAGGKLVDEAGVTMSEIVTSVKHVADIMGEITAASKEQSAGIAEVN 396 KEIK LI DSV KVDAGGKLVDEAG TMSEIVTSVKHVADIMGEITAAS+EQSAGIAEVN Sbjct: 410 KEIKGLISDSVEKVDAGGKLVDEAGATMSEIVTSVKHVADIMGEITAASQEQSAGIAEVN 469 Query: 397 GAIAQIDEITQQNAALVEQAAAAAESLQEQADLLARAVGVFKIDNA------AFAAQPVN 450 AI QIDEITQQNAALVEQAAAAAESLQEQAD+LARAV VF++ A Sbjct: 470 HAITQIDEITQQNAALVEQAAAAAESLQEQADVLARAVAVFRLKTAQAQGSIPTPPPVPA 529 Query: 451 TPSMLKTVNPP 461 P+ L+TVN P Sbjct: 530 PPAPLRTVNTP 540 >gi|300312038|ref|YP_003776130.1| methyl-accepting chemotaxis transmembrane I protein [Herbaspirillum seropedicae SmR1] Length = 579 Score = 348 bits (894), Expect = 5e-97, Method: Compositional matrix adjust. Identities = 222/360 (61%), Positives = 262/360 (72%), Gaps = 19/360 (5%) Query: 155 ASGDLTQTVEEKSHDEAGQLVHSLNTMQTKLAATVNEIKQSAAIIAVASQEIATGNADLS 214 A GDLT +E DE GQL+ +L +M L V +++ I AS EIA+GN DLS Sbjct: 230 AGGDLTTRIEPAGKDETGQLLVALKSMNDSLVGIVGQVRMGTQTITTASTEIASGNLDLS 289 Query: 215 NRTESQASSLEETASSMEQLTSTVKQNAENAHQANQLVMSASDYAVKGGKVVGDVVQTMG 274 +RTE QASSLEETAS+ME+LTSTVKQNA+NA QANQL +SAS+ A +GG VV VV TMG Sbjct: 290 SRTEEQASSLEETASAMEELTSTVKQNADNARQANQLAVSASEVASQGGAVVNQVVDTMG 349 Query: 275 SIKESSRKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAS 334 SI SSRKI DIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSA Sbjct: 350 SINASSRKIADIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAG 409 Query: 335 AAKEIKTLIGDSVSKVDAGGKLVDEAGVTMSEIVTSVKHVADIMGEITAASKEQSAGIAE 394 AAKEIK LI SV++VD G KLV+ AG+TMSE+V SV+ V DI+GEI++AS+EQS GI + Sbjct: 410 AAKEIKELIEGSVAQVDMGSKLVERAGITMSEVVQSVRRVTDIVGEISSASQEQSEGIEQ 469 Query: 395 VNGAIAQIDEITQQNAALVEQAAAAAESLQEQADLLARAVGVFKIDNAAFAAQPVNTPSM 454 VN AIAQ+DE+TQQNAALVE+AAAAA+SLQEQA+ L + VG FK++ QP S Sbjct: 470 VNLAIAQMDEVTQQNAALVEEAAAAAQSLQEQAETLTQTVGFFKLEQ-----QPDEPAS- 523 Query: 455 LKTVNPPLELATEAATHA---APAIKPAAARKTTLAPTPKRS------TAPQDEGSWEEF 505 PP+ A+ A T A APA +PAA + AP S A +D GSWE+F Sbjct: 524 ----RPPVRAASVARTAAVRHAPATRPAATLAASAAPAKPASGSRLPGGAAEDGGSWEQF 579 >gi|300310582|ref|YP_003774674.1| methyl-accepting chemotaxis I protein [Herbaspirillum seropedicae SmR1] Length = 668 Score = 342 bits (878), Expect = 3e-95, Method: Compositional matrix adjust. Identities = 215/321 (66%), Positives = 242/321 (75%), Gaps = 10/321 (3%) Query: 155 ASGDLTQTVEEKSHDEAGQLVHSLNTMQTKLAATVNEIKQSAAIIAVASQEIATGNADLS 214 A DLT + DE+ QL+ SLN M L V ++ S +I AS+EIATGNADLS Sbjct: 358 ADYDLTARSVAQGRDESAQLLGSLNAMTASLGGIVGRVRTSIEVIQHASREIATGNADLS 417 Query: 215 NRTESQASSLEETASSMEQLTSTVKQNAENAHQANQLVMSASDYAVKGGKVVGDVVQTMG 274 RTESQASSLEETAS+ME+LTSTV+ NAENA QA+QL SAS A +GG+VV +VVQTM Sbjct: 418 RRTESQASSLEETASAMEELTSTVQNNAENARQADQLAGSASRLAERGGEVVSNVVQTMD 477 Query: 275 SIKESSRKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAS 334 IK SSR+IVDII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAS Sbjct: 478 EIKTSSRRIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAS 537 Query: 335 AAKEIKTLIGDSVSKVDAGGKLVDEAGVTMSEIVTSVKHVADIMGEITAASKEQSAGIAE 394 AAKEIK LI DSV KVDAGG+LVDEAG+TM EIV SV+ VA IM EIT AS+EQS GI + Sbjct: 538 AAKEIKELISDSVDKVDAGGRLVDEAGMTMGEIVNSVRQVAGIMSEITQASQEQSTGIGQ 597 Query: 395 VNGAIAQIDEITQQNAALVEQAAAAAESLQEQADLLARAVGVFKIDNAAFAAQPVNTPSM 454 VN AI Q++ ITQQNAALVE+AAAAAESLQ+QA++L VGVFK + AA A P Sbjct: 598 VNDAITQMEAITQQNAALVEEAAAAAESLQQQAEMLWDEVGVFKTEGAAGGA-----PDG 652 Query: 455 LKTVNPPLELATEAATHAAPA 475 L V P AA APA Sbjct: 653 LPPVAP-----RSAALRLAPA 668 >gi|300312531|ref|YP_003776623.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 609 Score = 340 bits (872), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 220/384 (57%), Positives = 263/384 (68%), Gaps = 38/384 (9%) Query: 155 ASGDLTQTVEEKSHDEAGQLVHSLNTMQTKLAATVNEIKQSAAIIAVASQEIATGNADLS 214 A GDLT +E D + L++++ +M+ L +T+ IK SA IA ASQEIA+GN DLS Sbjct: 231 AQGDLTPNIETAPGDSS-SLLYAVRSMRDSLLSTITNIKASAGTIASASQEIASGNLDLS 289 Query: 215 NRTESQASSLEETASSMEQLTSTVKQNAENAHQANQLVMSASDYAVKGGKVVGDVVQTMG 274 RTE QA S+EETAS+ME+LT+TVKQNA+NA QANQL SAS+ A++GG VV VVQTM Sbjct: 290 GRTEQQAGSIEETASAMEELTATVKQNADNARQANQLAESASEVAIQGGSVVSQVVQTME 349 Query: 275 SIKESSRKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAS 334 I +SSRKI DIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAS Sbjct: 350 GITDSSRKIADIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAS 409 Query: 335 AAKEIKTLIGDSVSKVDAGGKLVDEAGVTMSEIVTSVKHVADIMGEITAASKEQSAGIAE 394 AAKEIKTLI DSV+KVD G KLV++AG TM+E+V SV+ V DI+GEI++AS+EQSAGIAE Sbjct: 410 AAKEIKTLIDDSVAKVDTGSKLVEQAGATMTEVVASVRRVTDIVGEISSASQEQSAGIAE 469 Query: 395 VNGAIAQIDEITQQNAALVEQAAAAAESLQEQADLLARAVGVFKIDNAAFAAQPVNTPSM 454 V AI Q+DE TQQNAALVEQAAAAA+SLQ+QA LA VG F +D + + P P Sbjct: 470 VGRAITQMDEGTQQNAALVEQAAAAAQSLQDQAATLAGLVGRFHVDGSQASIAP-TAPQA 528 Query: 455 LKTVNPPLELATEAATHAAPAIKPAAARKTTL---------------------------- 486 K P++ T AT PA++ AA + Sbjct: 529 AKPATRPVQPTTPPAT---PALRKPAAPQPARPALAASKAAAPKAAPKTAAAQPAKAEAP 585 Query: 487 -----APTPKRSTAPQDEGSWEEF 505 +P R A +DEG WE F Sbjct: 586 AAKPTGKSPSRLPAGEDEGDWETF 609 >gi|300313024|ref|YP_003777116.1| methyl-accepting chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 571 Score = 339 bits (870), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 211/354 (59%), Positives = 256/354 (72%), Gaps = 15/354 (4%) Query: 155 ASGDLTQTVEEKSHDEAGQLVHSLNTMQTKLAATVNEIKQSAAIIAVASQEIATGNADLS 214 A+GDLT + DE GQL+ +L M L V E++Q I AS EIATGN DLS Sbjct: 230 AAGDLTADIPTAHRDETGQLLEALRQMNGNLLNIVREVRQGTDTITTASAEIATGNMDLS 289 Query: 215 NRTESQASSLEETASSMEQLTSTVKQNAENAHQANQLVMSASDYAVKGGKVVGDVVQTMG 274 +RTE QA +LEETAS+ME+LTSTV+QN++NA QANQL ++AS+ A GG VVG VV TM Sbjct: 290 SRTEQQAGALEETASAMEELTSTVRQNSDNARQANQLAVNASEVAQAGGTVVGKVVATMS 349 Query: 275 SIKESSRKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAS 334 +I +SSRKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSA+ Sbjct: 350 AINDSSRKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSAA 409 Query: 335 AAKEIKTLIGDSVSKVDAGGKLVDEAGVTMSEIVTSVKHVADIMGEITAASKEQSAGIAE 394 AA EIK LI DSV+KVD G KLVDEAG TM+E+V SVK V+DI+ EITAA EQ+ GI + Sbjct: 410 AAHEIKALIDDSVAKVDTGSKLVDEAGQTMNEVVASVKRVSDIVAEITAAGAEQTQGIEQ 469 Query: 395 VNGAIAQIDEITQQNAALVEQAAAAAESLQEQADLLARAVGVFKIDNAAFAAQ--PVNTP 452 +N A+ Q+DE TQQNAALVEQAAAAA++LQEQA L+ V VF++D AQ PV Sbjct: 470 INNAVVQMDENTQQNAALVEQAAAAAKALQEQAGRLSETVSVFRLD-----AQHVPVVVS 524 Query: 453 SMLKTVNPPLELATEAATHAAPAIKPAAARKTTLA-PTPKRSTAPQDEGSWEEF 505 T P ++ T A PA+ A +R +A P ++A ++G WE+F Sbjct: 525 RAAATAQPERDI-----TPARPAL--AQSRSKVMARPAHSNTSASAEQGDWEQF 571 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.310 0.125 0.331 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 950,511 Number of extensions: 27599 Number of successful extensions: 449 Number of sequences better than 1.0e-08: 72 Number of HSP's gapped: 247 Number of HSP's successfully gapped: 74 Length of query: 505 Length of database: 1,619,870 Length adjustment: 89 Effective length of query: 416 Effective length of database: 1,198,455 Effective search space: 498557280 Effective search space used: 498557280 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 133 (55.8 bits)