BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0161.p
         (273 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313003|ref|YP_003777095.1| histidine ammonia-lyase [Herbas...   332   1e-92
gi|300313821|ref|YP_003777913.1| histidine ammonia-lyase [Herbas...   105   4e-24

>gi|300313003|ref|YP_003777095.1| histidine ammonia-lyase
           [Herbaspirillum seropedicae SmR1]
          Length = 526

 Score =  332 bits (852), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 160/191 (83%), Positives = 170/191 (89%), Gaps = 4/191 (2%)

Query: 1   MNGTAVMTALACMAYERAEYLCKLATRITAMASFTLDGNAHHFDATLFSVKPHPGQQQVA 60
           MNGTAVMTALAC+A++RA YLC+LATRITAM+SFTLDGNAHHFDATLFS KPHPGQQQVA
Sbjct: 208 MNGTAVMTALACLAFDRARYLCQLATRITAMSSFTLDGNAHHFDATLFSAKPHPGQQQVA 267

Query: 61  GWLQTDLRCDQPLRNEKRLQDRYSIRCAPHVIGVLTDALPWLRSYIENELNSANDNPLID 120
            WLQ DL C Q  RNEKRLQDRYS+RCAPHVIGVL DALP LR +IENELNSANDNPLID
Sbjct: 268 AWLQRDLPCGQAHRNEKRLQDRYSVRCAPHVIGVLNDALPSLRQFIENELNSANDNPLID 327

Query: 121 PDNERVLHGGHFYGGHIAFAMDSMKNAVANIADLLDRQMALMVDNRYNNGLPANLSGVKG 180
           PD ERVLHGGHFYGGHIAFAMDSMK AVAN+ADLLDRQMALMVD RYNNGLPANLSG +G
Sbjct: 328 PDGERVLHGGHFYGGHIAFAMDSMKTAVANVADLLDRQMALMVDQRYNNGLPANLSGAQG 387

Query: 181 R----NNGLPA 187
                N+GL A
Sbjct: 388 ARAPINHGLKA 398


>gi|300313821|ref|YP_003777913.1| histidine ammonia-lyase
           [Herbaspirillum seropedicae SmR1]
          Length = 542

 Score =  105 bits (262), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 69/210 (32%), Positives = 107/210 (50%), Gaps = 23/210 (10%)

Query: 1   MNGTAVMTALACMAYERAEYLCKLATRITAMASFTLDGNAHHFDATLFSVKPHPGQQQVA 60
           +NG     A+A +A   A +L   A     +    +      FD  +   +PH GQ + A
Sbjct: 202 INGCTASLAVAILAAHDARHLLTDACLSLGLTLEAMRAEMSAFDPRIQQARPHAGQIKTA 261

Query: 61  GWLQTDLRC--------------DQPLRNE----KRLQDRYSIRCAPHVIGVLTDALPWL 102
             ++T L+               D+  R +     R+QD YS+RCAP V G + DAL ++
Sbjct: 262 EVIRTLLQGSTRTTHAARAVQLPDELRRTDIAYTARIQDVYSLRCAPQVYGPVFDALDYI 321

Query: 103 RSYIENELNSANDNPLIDPDNE----RVLHGGHFYGGHIAFAMDSMKNAVANIADLLDRQ 158
            + IE E NSA DNPLI    E     ++ GG+F+G ++A AMD +  A+ ++  + +R+
Sbjct: 322 DTIIEKETNSATDNPLIFHKEEGEGFEIISGGNFHGQYLAQAMDLLAMAITDLGSICERR 381

Query: 159 MALMVDNRYNNGLPANL-SGVKGRNNGLPA 187
           +A ++D   + GLP NL SGV+G N G P 
Sbjct: 382 IARLIDPTLSWGLPRNLMSGVRGVNTGYPV 411


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.135    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 989,282
Number of extensions: 45327
Number of successful extensions: 106
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 104
Number of HSP's successfully gapped: 2
Length of query: 273
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 189
Effective length of database: 1,222,130
Effective search space: 230982570
Effective search space used: 230982570
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)