BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0155.p
         (811 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313006|ref|YP_003777098.1| exporter protein [Herbaspirillu...   795   0.0  

>gi|300313006|ref|YP_003777098.1| exporter protein [Herbaspirillum
           seropedicae SmR1]
          Length = 810

 Score =  795 bits (2054), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 495/785 (63%), Positives = 583/785 (74%), Gaps = 17/785 (2%)

Query: 40  GHNAYLWLVQRASPDTDILALLPSSRHDDAM-QQAFVHMVDSAQQKVVVLIGDADWDKAM 98
           GHNA+LWL QRASPDTDILALLP +   DA+ QQAF HMVDSAQQK+VVL+GD DW +A 
Sbjct: 28  GHNAWLWLGQRASPDTDILALLPGASSKDAVRQQAFSHMVDSAQQKLVVLVGDRDWKRAQ 87

Query: 99  QAASAYETVIGKQPALLQPLAGDAAQLQGDWLASFDRSRLMLLTQEQRDKLRSDSPQQWG 158
             A AY TV+     L+ P+  D+AQ Q  WL S DRSR +LL   QR +L + + QQW 
Sbjct: 88  AGAQAYLTVLHAHADLVAPINDDSAQWQSQWLGSLDRSRSLLLGDAQRAQLATTTAQQWN 147

Query: 159 QLALGTMYGAFGGPRLGAWQDDPFGLFSGWVQARAQETPVRPRDGRLFVDSGGRSYVLLL 218
           Q ALG +YGAFGGPRLGAWQDDPFGLF  WVQ RA+ETPVRPRDG LFV+  G SY LLL
Sbjct: 148 QRALGGLYGAFGGPRLGAWQDDPFGLFGDWVQERARETPVRPRDGMLFVERDGVSYALLL 207

Query: 219 LNLQQSAFSISAQQQVIPLLEQAGRAAKQAVPDAEIITAGVILHAAAGSSQASSEMTTIG 278
           L L+  AFS+ AQ+QV+PLL QA RAA+      E+++ GV+LHAAA S+QASSE  TIG
Sbjct: 208 LELKAPAFSMQAQEQVVPLLAQARRAARTQA--GEVVSGGVVLHAAAASAQASSESATIG 265

Query: 279 AGSLIGIVLLMWLTFRSLKPIALIALSIAIGCLGALSVSWLLFGRLHLLTLVFGASLVGI 338
           AGSL+GI+LLMWLTFRSLKPI  IALSIA+GCLGALSVS L+FG++HLLTLVFGASL+GI
Sbjct: 266 AGSLLGILLLMWLTFRSLKPILYIALSIAVGCLGALSVSMLVFGKIHLLTLVFGASLIGI 325

Query: 339 AQDYAIYFLCARLGTAAQTDSRALLRRLLPGLALMLLAAVIGYLGMALTPFPGLRQMAVF 398
           AQDY IYFLCARL   A  DS  LLRRLLPGLALMLLAA+IGYLGMALTPFPGL+QMAVF
Sbjct: 326 AQDYGIYFLCARLAAPATQDSATLLRRLLPGLALMLLAALIGYLGMALTPFPGLQQMAVF 385

Query: 399 SVLGLLFAWLTVILWFPALIHAGTLRSTALADRYSHSIGRWPRFSASRNGYLLLATLAVF 458
           S LGL+FAWLTV  WFP LI   TL +T  A  +  SI RWP        +L+L      
Sbjct: 386 SALGLVFAWLTVACWFPQLIGPQTLCATPRAQGFGQSIARWPDLLGGFAWHLVLPAAVAL 445

Query: 459 I---VAGLTRLNVSDDIRALQKTPQRLLDDQIKLGKLLDTPNPAQFYLVRGDTPEQVLQR 515
           I   +AG+ RL+ SDDIRALQK+P  LL DQ+++ +LL+   P QFYLVRG + E VLQ+
Sbjct: 446 IGLAIAGVARLHSSDDIRALQKSPPELLQDQMRISQLLELAAPVQFYLVRGASAEAVLQQ 505

Query: 516 EEQLKQRLQDLIGKKLISGVQAVSNWVPSQRQQQADRDLVAATLLAPQGP----LAAIAA 571
           EE L+++LQ L+ +KLI+GVQAVSNW PSQ++QQ +  L+   LL PQG     +   A 
Sbjct: 506 EEALREKLQALVQRKLITGVQAVSNWAPSQQRQQDNLALLRRALLEPQGESPDAVTLTAQ 565

Query: 572 AIDENSLWVQDMRQRLLAHGKPLLPQAFIDSPAGQPWRHLWLGKTGAQYASIVAVRGLSD 631
           AI E+  W Q +RQR+L   +P+ P+ F+ +PAG   RHLWLG+   Q+ASIVA+RGL+D
Sbjct: 566 AIGESPQWAQALRQRMLDKTQPITPEEFLATPAGAASRHLWLGQVDGQFASIVALRGLTD 625

Query: 632 YRQLPLLAAAAAPAEGVQWVDKVADISAVLHYYREYMTWALLAAYFTIFLLLSLRYRRAA 691
           YRQL  LAA A    GVQWVDKV +IS+VL  YR YM WALL AY  IF LL+LRYRR A
Sbjct: 626 YRQLGQLAAVAEGMPGVQWVDKVGEISSVLRQYRIYMGWALLCAYAAIFALLALRYRRRA 685

Query: 692 WRAIAPPLLATLATLALFGLTGQPLQLFHVLACLLLLGLGVDYGIFLQEPTDRHRRFSWL 751
           WRA+APPLLA+L TL LFG  GQPLQLFHVLA LL+LGLGVDYGIFL E +   R  +WL
Sbjct: 686 WRALAPPLLASLLTLGLFGWLGQPLQLFHVLAGLLVLGLGVDYGIFLLESSRDQRPHAWL 745

Query: 752 TVGLSAISALLSFGLLALSSSPPLHAFGLTMLIGMALVWLISPCFS-----GAASPSTSP 806
           TV LSA SALLSFGLLALS SPPLHAFGLTML GM LVWL++P F+       A+P   P
Sbjct: 746 TVALSAASALLSFGLLALSHSPPLHAFGLTMLCGMLLVWLLAPLFTHPGPAAHATPDAQP 805

Query: 807 YDDKQ 811
             DK+
Sbjct: 806 --DKE 808


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.137    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 2,315,181
Number of extensions: 89370
Number of successful extensions: 482
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 477
Number of HSP's successfully gapped: 1
Length of query: 811
Length of database: 1,619,870
Length adjustment: 93
Effective length of query: 718
Effective length of database: 1,179,515
Effective search space: 846891770
Effective search space used: 846891770
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 135 (56.6 bits)