BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0034.0153.p
         (625 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310586|ref|YP_003774678.1| polyphosphate kinase [Herbaspir...   936   0.0  

>gi|300310586|ref|YP_003774678.1| polyphosphate kinase
           [Herbaspirillum seropedicae SmR1]
          Length = 704

 Score =  936 bits (2418), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 454/538 (84%), Positives = 490/538 (91%), Gaps = 1/538 (0%)

Query: 1   MTRKEKPDDNAHTEINPTAIYLNRELSQLAFNRRVLAQAENKQIPLLERLRYLCICSSNL 60
           MTRK KP+ +   ++    IYLNRELSQLAFNRRVLAQAE+  +PLLERLRYLCICSSNL
Sbjct: 1   MTRKVKPESSTQPDLPVNTIYLNRELSQLAFNRRVLAQAEDDSVPLLERLRYLCICSSNL 60

Query: 61  DEFFEVRIASLLANRIEGEHIDPPELSAALERTSIECHQIVARQYELLNKDILPQLANKG 120
           DEFFEVRIASLLANRIEGE+IDPPEL AALERTS ECH+IVARQYELLN++ILPQLA  G
Sbjct: 61  DEFFEVRIASLLANRIEGENIDPPELRAALERTSAECHRIVARQYELLNEEILPQLAANG 120

Query: 121 VRLLRHEDRNDAQRAWVRQYFEHNVRPLLTPIGLDPAHPFPQVLNKSLNFIIELSGKDAF 180
           + LLRH+DRNDAQRAWV+QYFE +VRPLLTPIGLDPAHPFPQV NKSLNFIIELSGKDAF
Sbjct: 121 IHLLRHDDRNDAQRAWVKQYFEQHVRPLLTPIGLDPAHPFPQVHNKSLNFIIELSGKDAF 180

Query: 181 GRGTAIAIVKAPRVLPRVIRLPDELSDKKGVSFCLLSSVIHAHIGELFTGREITAYSQFR 240
           GRGT I I+KAPRVLPRVI+LPD LS K   SFCLLSSVIHAHI +LF GR+ITAYSQFR
Sbjct: 181 GRGTGIVIIKAPRVLPRVIKLPDHLSAKGQSSFCLLSSVIHAHIADLFPGRDITAYSQFR 240

Query: 241 VTRNSDLWVDEEEVKNLRQALQTELQSRQFGVGVRLEVASNCPEHLAQFLLEQFSIERNR 300
           VTRNSDLWVDEEEVKNLRQAL+TELQSRQFGV VRLEVA+NCPEHLAQ LL QF+IERNR
Sbjct: 241 VTRNSDLWVDEEEVKNLRQALETELQSRQFGVAVRLEVAANCPEHLAQLLLNQFNIERNR 300

Query: 301 LYAVKGPVNLVRLSELVDLVSEPALRFPPFAQTLPPHLQNENIFAVLKKRDVLLHHPFQS 360
           LYAV+GPVN+VRL E+V+LV++P LRFPPF+ TLPP L +ENIFA L K+DVLLHHPFQS
Sbjct: 301 LYAVQGPVNMVRLGEIVNLVNQPELRFPPFSPTLPPQLASENIFAALDKKDVLLHHPFQS 360

Query: 361 FQPVVDFIRTAAQDPNVMAIKQTIYRTGMNSDLMEALIHAAQRGKEVTVIVELMARFDEE 420
           FQPVVDFIRTAA DP V+AIKQTIYRTGMNSDLMEALI+AAQ GKEVTVIVELMARFDEE
Sbjct: 361 FQPVVDFIRTAAHDPGVLAIKQTIYRTGMNSDLMEALIYAAQHGKEVTVIVELMARFDEE 420

Query: 421 ANINWAVKLEQAGAQVVYGVVGLKTHAKIALVIRR-EDNALHFYAHLGTGNYHPTTTKFY 479
           ANINWAVKLEQAGAQVVYGVVGLKTHAK+ALVIRR ED  L FYAHLGTGNYHP TTKFY
Sbjct: 421 ANINWAVKLEQAGAQVVYGVVGLKTHAKLALVIRRDEDQGLRFYAHLGTGNYHPNTTKFY 480

Query: 480 TDFGLLTSHRELTAEVNEVFIHLTTLTKPRTLNHLWLAPFSLQKEIIRAIRNEAQIAR 537
           TDFGLLTS++ELTAEVNEVFIHLT+LTKPR L HLWLAPFSLQKEIIRAIRNE QIAR
Sbjct: 481 TDFGLLTSNQELTAEVNEVFIHLTSLTKPRNLTHLWLAPFSLQKEIIRAIRNEGQIAR 538


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.136    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,740,886
Number of extensions: 68096
Number of successful extensions: 171
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 170
Number of HSP's successfully gapped: 1
Length of query: 625
Length of database: 1,619,870
Length adjustment: 91
Effective length of query: 534
Effective length of database: 1,188,985
Effective search space: 634917990
Effective search space used: 634917990
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 133 (55.8 bits)